basic.h

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#ifndef VIENNA_RNA_PACKAGE_CONSTRAINTS_H
#define VIENNA_RNA_PACKAGE_CONSTRAINTS_H

#include <ViennaRNA/fold_compound.h>

#define VRNA_CONSTRAINT_FILE      0

#define VRNA_CONSTRAINT_SOFT_MFE  0

#define VRNA_CONSTRAINT_SOFT_PF   VRNA_OPTION_PF

#define VRNA_DECOMP_PAIR_HP     (unsigned char)1

#define VRNA_DECOMP_PAIR_IL     (unsigned char)2

#define VRNA_DECOMP_PAIR_ML     (unsigned char)3
#define VRNA_DECOMP_PAIR_ML_EXT     (unsigned char)23

#define VRNA_DECOMP_PAIR_ML_OUTSIDE     (unsigned char)4

#define VRNA_DECOMP_ML_ML_ML    (unsigned char)5

#define VRNA_DECOMP_ML_STEM     (unsigned char)6

#define VRNA_DECOMP_ML_ML       (unsigned char)7

#define VRNA_DECOMP_ML_UP       (unsigned char)8

#define VRNA_DECOMP_ML_ML_STEM (unsigned char)9

#define VRNA_DECOMP_ML_COAXIAL  (unsigned char)10

#define VRNA_DECOMP_ML_COAXIAL_ENC  (unsigned char)11

#define VRNA_DECOMP_EXT_EXT     (unsigned char)12

#define VRNA_DECOMP_EXT_UP      (unsigned char)13

#define VRNA_DECOMP_EXT_STEM (unsigned char)14

#define VRNA_DECOMP_EXT_EXT_EXT (unsigned char)15

#define VRNA_DECOMP_EXT_STEM_EXT (unsigned char)16

#define VRNA_DECOMP_EXT_STEM_OUTSIDE (unsigned char)17

#define VRNA_DECOMP_EXT_EXT_STEM (unsigned char)18

#define VRNA_DECOMP_EXT_EXT_STEM1 (unsigned char)19

#define VRNA_DECOMP_EXT_STEM_EXT1 (unsigned char)20

#define VRNA_DECOMP_EXT_L         (unsigned char)21
#define VRNA_DECOMP_EXT_EXT_L     (unsigned char)22

void vrna_constraints_add(vrna_fold_compound_t  *vc,
                          const char            *constraint,
                          unsigned int          options);


#endif