RNAlib-2.4.14
edit_cost.h
Go to the documentation of this file.
1 
6 #define PRIVATE static
7 
8 PRIVATE char sep = ':';
9 PRIVATE char *coding = "Null:U:P:H:B:I:M:S:E:R";
10 
11 #define DIST_INF 10000 /* infinity */
12 
13 typedef int CostMatrix[10][10];
14 
15 PRIVATE CostMatrix *EditCost; /* will point to UsualCost or ShapiroCost */
16 
17 PRIVATE CostMatrix UsualCost =
18 {
19 
20 /* Null, U, P, H, B, I, M, S, E, R */
21 
22  { 0, 1, 2, 2, 2, 2, 2, 1, 1, DIST_INF}, /* Null replaced */
23  { 1, 0, 1, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF}, /* U replaced */
24  { 2, 1, 0, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF}, /* P replaced */
25  { 2, DIST_INF, DIST_INF, 0, 2, 2, 2, DIST_INF, DIST_INF, DIST_INF}, /* H replaced */
26  { 2, DIST_INF, DIST_INF, 2, 0, 1, 2, DIST_INF, DIST_INF, DIST_INF}, /* B replaced */
27  { 2, DIST_INF, DIST_INF, 2, 1, 0, 2, DIST_INF, DIST_INF, DIST_INF}, /* I replaced */
28  { 2, DIST_INF, DIST_INF, 2, 2, 2, 0, DIST_INF, DIST_INF, DIST_INF}, /* M replaced */
29  { 1, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, 0, DIST_INF, DIST_INF}, /* S replaced */
30  { 1, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, 0, DIST_INF}, /* E replaced */
31  { DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, 0}, /* R replaced */
32 
33 };
34 
35 
36 PRIVATE CostMatrix ShapiroCost =
37 {
38 
39 /* Null, U, P, H, B, I, M, S, E, R */
40 
41  { 0, 1, 2, 100, 5, 5, 75, 5, 5, DIST_INF}, /* Null replaced */
42  { 1, 0, 1, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF}, /* U replaced */
43  { 2, 1, 0, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF}, /* P replaced */
44  { 100, DIST_INF, DIST_INF, 0, 8, 8, 8, DIST_INF, DIST_INF, DIST_INF}, /* H replaced */
45  { 5, DIST_INF, DIST_INF, 8, 0, 3, 8, DIST_INF, DIST_INF, DIST_INF}, /* B replaced */
46  { 5, DIST_INF, DIST_INF, 8, 3, 0, 8, DIST_INF, DIST_INF, DIST_INF}, /* I replaced */
47  { 75, DIST_INF, DIST_INF, 8, 8, 8, 0, DIST_INF, DIST_INF, DIST_INF}, /* M replaced */
48  { 5, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, 0, DIST_INF, DIST_INF}, /* S replaced */
49  { 5, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, 0, DIST_INF}, /* E replaced */
50  { DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, DIST_INF, 0}, /* R replaced */
51 
52 };
53