RNAlib-2.4.14
mm.h
Go to the documentation of this file.
1 #ifndef VIENNA_RNA_PACKAGE_MM_H
2 #define VIENNA_RNA_PACKAGE_MM_H
3 
13 #include <ViennaRNA/fold_compound.h>
14 
15 int
16 vrna_maximum_matching(vrna_fold_compound_t *fc);
17 
18 
19 int
20 vrna_maximum_matching_simple(const char *sequence);
21 
22 
23 #ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY
24 
25 unsigned int
26 maximumMatching(const char *string);
27 
28 
29 unsigned int *
30 maximumMatchingConstraint(const char *string,
31  short *ptable);
32 
33 
34 unsigned int *
35 maximumMatching2Constraint(const char *string,
36  short *ptable,
37  short *ptable2);
38 
39 
40 #endif
41 
42 #endif
vrna_fc_s
The most basic data structure required by many functions throughout the RNAlib.
Definition: fold_compound.h:132
vrna_maximum_matching_simple
int vrna_maximum_matching_simple(const char *sequence)
vrna_maximum_matching
int vrna_maximum_matching(vrna_fold_compound_t *fc)
fold_compound.h
The Basic Fold Compound API.