alignments.h

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#ifndef VIENNA_RNA_PACKAGE_PLOT_ALN_H
#define VIENNA_RNA_PACKAGE_PLOT_ALN_H

#ifdef VRNA_WARN_DEPRECATED
# if defined(__clang__)
#  define DEPRECATED(func, msg) func __attribute__ ((deprecated("", msg)))
# elif defined(__GNUC__)
#  define DEPRECATED(func, msg) func __attribute__ ((deprecated(msg)))
# else
#  define DEPRECATED(func, msg) func
# endif
#else
# define DEPRECATED(func, msg) func
#endif

int
vrna_file_PS_aln(const char   *filename,
                 const char   **seqs,
                 const char   **names,
                 const char   *structure,
                 unsigned int columns);


int
vrna_file_PS_aln_slice(const char   *filename,
                       const char   **seqs,
                       const char   **names,
                       const char   *structure,
                       unsigned int start,
                       unsigned int end,
                       int          offset,
                       unsigned int columns);


#ifndef VRNA_DISABLE_BACKWARD_COMPATIBILITY

DEPRECATED(int PS_color_aln(const char  *structure,
                            const char  *filename,
                            const char  *seqs[],
                            const char  *names[]),
           "Use vrna_file_PS_aln() instead!");


DEPRECATED(int aliPS_color_aln(const char *structure,
                               const char *filename,
                               const char *seqs[],
                               const char *names[]),
           "Use vrna_file_PS_aln() instead!");

#endif

#endif