RNAlib-2.4.14
svm.h
1 #ifndef VIENNA_RNA_PACKAGE_UTILS_SVM_H
2 #define VIENNA_RNA_PACKAGE_UTILS_SVM_H
3 
4 extern char *avg_model_string;
5 extern char *sd_model_string;
6 
7 float get_z(char *sequence,
8  double energy);
9 double avg_regression (int N,
10  int A,
11  int C,
12  int G,
13  int T,
14  struct svm_model *avg_model,
15  int *info );
16 double sd_regression (int N,
17  int A,
18  int C,
19  int G,
20  int T,
21  struct svm_model *sd_model);
22 double minimal_sd (int N,
23  int A,
24  int C,
25  int G,
26  int T);
27 struct svm_model *svm_load_model_string(char *modelString);
28 int *get_seq_composition( short *S,
29  unsigned int start,
30  unsigned int stop,
31  unsigned int length);
32 
33 #endif