Kmer.hpp File Reference

Interface for the class Kmer: More...

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Data Structures
class	Kmer
	Interface to store and manipulate k-mers. More...
struct	KmerHash

Detailed Description

Interface for the class Kmer:

• Store k-mer strings by using 2 bits per base
• Easily return reverse-complements of k-mers, e.g. TTGG -> CCAA
• Easily compare k-mers
• Provide hash of k-mers
• Get last and next kmer, e.g. ACGT -> CGTT or ACGT -> AACGT