| AbstractDiscreteDistribution(size_t nbClasses, const std::string &prefix="") | bpp::AbstractDiscreteDistribution | |
| AbstractDiscreteDistribution(size_t nbClasses, double precision, const std::string &prefix="") | bpp::AbstractDiscreteDistribution | |
| AbstractDiscreteDistribution(const AbstractDiscreteDistribution &adde) | bpp::AbstractDiscreteDistribution | |
| AbstractParameterAliasable(const std::string &prefix) | bpp::AbstractParameterAliasable | inline |
| AbstractParameterAliasable(const AbstractParameterAliasable &ap) | bpp::AbstractParameterAliasable | |
| AbstractParametrizable(const std::string &prefix) | bpp::AbstractParametrizable | inline |
| add(double category, double probability) | bpp::AbstractDiscreteDistribution | virtual |
| addParameter_(Parameter *parameter) | bpp::AbstractParameterAliasable | inlineprotected |
| addParameters_(const ParameterList ¶meters) | bpp::AbstractParameterAliasable | inlineprotected |
| bpp::aliasParameters(const std::string &p1, const std::string &p2)=0 | bpp::ParameterAliasable | pure virtual |
| bpp::aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose)=0 | bpp::ParameterAliasable | pure virtual |
| bpp::AbstractParameterAliasable::aliasParameters(const std::string &p1, const std::string &p2) | bpp::AbstractParameterAliasable | virtual |
| bpp::AbstractParameterAliasable::aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose) | bpp::AbstractParameterAliasable | virtual |
| bounds_ | bpp::AbstractDiscreteDistribution | protected |
| Clonable() | bpp::Clonable | inline |
| clone() const | bpp::ConstantDistribution | inlinevirtual |
| ConstantDistribution(double value) | bpp::ConstantDistribution | |
| ConstantDistribution(const ConstantDistribution &) | bpp::ConstantDistribution | |
| deleteParameter_(size_t index) | bpp::AbstractParameterAliasable | inlineprotected |
| deleteParameter_(std::string &name) | bpp::AbstractParameterAliasable | inlineprotected |
| deleteParameters_(const std::vector< std::string > &names) | bpp::AbstractParameterAliasable | inlineprotected |
| DiscreteDistribution() | bpp::DiscreteDistribution | inline |
| discretize() | bpp::ConstantDistribution | inlinevirtual |
| distribution_ | bpp::AbstractDiscreteDistribution | protected |
| Expectation(double a) const | bpp::ConstantDistribution | inlinevirtual |
| fireParameterChanged(const ParameterList ¶meters) | bpp::ConstantDistribution | virtual |
| bpp::getAlias(const std::string &name) const =0 | bpp::ParameterAliasable | pure virtual |
| bpp::AbstractParameterAliasable::getAlias(const std::string &name) const | bpp::AbstractParameterAliasable | virtual |
| getAliasedParameters(const ParameterList &pl) const | bpp::AbstractParameterAliasable | |
| getBound(size_t i) const | bpp::AbstractDiscreteDistribution | inlinevirtual |
| getBounds() const | bpp::AbstractDiscreteDistribution | virtual |
| getCategories() const | bpp::AbstractDiscreteDistribution | virtual |
| getCategory(size_t categoryIndex) const | bpp::AbstractDiscreteDistribution | virtual |
| getFrom(const std::string &name) const | bpp::AbstractParameterAliasable | |
| getIInfCumulativeProbability(double category) const | bpp::AbstractDiscreteDistribution | virtual |
| bpp::getIndependentParameters() const =0 | bpp::ParameterAliasable | pure virtual |
| bpp::AbstractParameterAliasable::getIndependentParameters() const | bpp::AbstractParameterAliasable | inlinevirtual |
| getInfCumulativeProbability(double category) const | bpp::AbstractDiscreteDistribution | virtual |
| getLowerBound() const | bpp::ConstantDistribution | inlinevirtual |
| getName() const | bpp::ConstantDistribution | inlinevirtual |
| bpp::getNamespace() const =0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::getNamespace() const | bpp::AbstractParametrizable | inlinevirtual |
| getNumberOfCategories() const | bpp::AbstractDiscreteDistribution | virtual |
| bpp::getNumberOfIndependentParameters() const =0 | bpp::ParameterAliasable | pure virtual |
| bpp::AbstractParameterAliasable::getNumberOfIndependentParameters() const | bpp::AbstractParameterAliasable | inlinevirtual |
| bpp::getNumberOfParameters() const =0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::getNumberOfParameters() const | bpp::AbstractParametrizable | inlinevirtual |
| bpp::getParameter(const std::string &name) const =0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::getParameter(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
| getParameter_(const std::string &name) | bpp::AbstractParametrizable | inlineprotected |
| getParameter_(size_t index) | bpp::AbstractParametrizable | inlineprotected |
| getParameter_(size_t index) const | bpp::AbstractParametrizable | inlineprotected |
| bpp::getParameterNameWithoutNamespace(const std::string &name) const =0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::getParameterNameWithoutNamespace(const std::string &name) const | bpp::AbstractParametrizable | virtual |
| bpp::getParameters() const =0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::getParameters() const | bpp::AbstractParametrizable | inlinevirtual |
| getParameters_() | bpp::AbstractParametrizable | inlineprotected |
| bpp::getParameterValue(const std::string &name) const =0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::getParameterValue(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
| getParameterWithNamespace_(const std::string &name) | bpp::AbstractParametrizable | inlineprotected |
| getParameterWithNamespace_(const std::string &name) const | bpp::AbstractParametrizable | inlineprotected |
| getProbabilities() const | bpp::AbstractDiscreteDistribution | virtual |
| getProbability(size_t categoryIndex) const | bpp::AbstractDiscreteDistribution | virtual |
| getProbability(double category) const | bpp::AbstractDiscreteDistribution | virtual |
| getSSupCumulativeProbability(double category) const | bpp::AbstractDiscreteDistribution | virtual |
| getSupCumulativeProbability(double category) const | bpp::AbstractDiscreteDistribution | virtual |
| getUpperBound() const | bpp::ConstantDistribution | inlinevirtual |
| getValueCategory(double value) const | bpp::AbstractDiscreteDistribution | virtual |
| bpp::hasParameter(const std::string &name) const =0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::hasParameter(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
| intMinMax_ | bpp::AbstractDiscreteDistribution | protected |
| bpp::matchParametersValues(const ParameterList ¶meters)=0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::matchParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
| median_ | bpp::AbstractDiscreteDistribution | protected |
| numberOfCategories_ | bpp::AbstractDiscreteDistribution | protected |
| operator=(const ConstantDistribution &) | bpp::ConstantDistribution | |
| bpp::AbstractDiscreteDistribution::operator=(const AbstractDiscreteDistribution &adde) | bpp::AbstractDiscreteDistribution | |
| bpp::AbstractParameterAliasable::operator=(const AbstractParameterAliasable &ap) | bpp::AbstractParameterAliasable | |
| ParameterAliasable() | bpp::ParameterAliasable | inline |
| Parametrizable() | bpp::Parametrizable | inline |
| pProb(double x) const | bpp::ConstantDistribution | inlinevirtual |
| precision() const | bpp::AbstractDiscreteDistribution | inline |
| print(OutputStream &out) const | bpp::AbstractDiscreteDistribution | virtual |
| qProb(double x) const | bpp::ConstantDistribution | inlinevirtual |
| rand() const | bpp::AbstractDiscreteDistribution | virtual |
| randC() const | bpp::ConstantDistribution | inlinevirtual |
| resetParameters_() | bpp::AbstractParameterAliasable | inlineprotected |
| restrictToConstraint(const Constraint &c) | bpp::ConstantDistribution | virtual |
| set(double category, double probability) | bpp::AbstractDiscreteDistribution | virtual |
| bpp::setAllParametersValues(const ParameterList ¶meters)=0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::setAllParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
| setMedian(bool median) | bpp::AbstractDiscreteDistribution | inlinevirtual |
| bpp::setNamespace(const std::string &prefix)=0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::setNamespace(const std::string &prefix) | bpp::AbstractParameterAliasable | virtual |
| setNumberOfCategories(size_t nbClasses) | bpp::AbstractDiscreteDistribution | virtual |
| bpp::setParametersValues(const ParameterList ¶meters)=0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::setParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
| bpp::setParameterValue(const std::string &name, double value)=0 | bpp::Parametrizable | pure virtual |
| bpp::AbstractParameterAliasable::setParameterValue(const std::string &name, double value) | bpp::AbstractParametrizable | inlinevirtual |
| strictLowerBound() const | bpp::AbstractDiscreteDistribution | inlinevirtual |
| strictUpperBound() const | bpp::AbstractDiscreteDistribution | inlinevirtual |
| bpp::unaliasParameters(const std::string &p1, const std::string &p2)=0 | bpp::ParameterAliasable | pure virtual |
| bpp::AbstractParameterAliasable::unaliasParameters(const std::string &p1, const std::string &p2) | bpp::AbstractParameterAliasable | virtual |
| value_ | bpp::ConstantDistribution | private |
| ~AbstractDiscreteDistribution() | bpp::AbstractDiscreteDistribution | inlinevirtual |
| ~AbstractParameterAliasable() | bpp::AbstractParameterAliasable | virtual |
| ~AbstractParametrizable() | bpp::AbstractParametrizable | inlinevirtual |
| ~Clonable() | bpp::Clonable | inlinevirtual |
| ~ConstantDistribution() | bpp::ConstantDistribution | inlinevirtual |
| ~DiscreteDistribution() | bpp::DiscreteDistribution | inlinevirtual |
| ~ParameterAliasable() | bpp::ParameterAliasable | inlinevirtual |
| ~Parametrizable() | bpp::Parametrizable | inlinevirtual |