| AbstractParameterAliasable(const std::string &prefix) | bpp::AbstractParameterAliasable | inline |
| AbstractParameterAliasable(const AbstractParameterAliasable &ap) | bpp::AbstractParameterAliasable | |
| AbstractParametrizable(const std::string &prefix) | bpp::AbstractParametrizable | inline |
| addParameter_(Parameter *parameter) | bpp::AbstractParameterAliasable | inlineprotected |
| addParameters_(const ParameterList ¶meters) | bpp::AbstractParameterAliasable | inlineprotected |
| aliasParameters(const std::string &p1, const std::string &p2) | bpp::AbstractParameterAliasable | virtual |
| aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose) | bpp::AbstractParameterAliasable | virtual |
| Clonable() | bpp::Clonable | inline |
| clone() const | bpp::Simplex | inlinevirtual |
| deleteParameter_(size_t index) | bpp::AbstractParameterAliasable | inlineprotected |
| deleteParameter_(std::string &name) | bpp::AbstractParameterAliasable | inlineprotected |
| deleteParameters_(const std::vector< std::string > &names) | bpp::AbstractParameterAliasable | inlineprotected |
| dim_ | bpp::Simplex | private |
| dimension() const | bpp::Simplex | inline |
| fireParameterChanged(const ParameterList ¶meters) | bpp::Simplex | virtual |
| getAlias(const std::string &name) const | bpp::AbstractParameterAliasable | virtual |
| getAliasedParameters(const ParameterList &pl) const | bpp::AbstractParameterAliasable | |
| getFrequencies() const | bpp::Simplex | inline |
| getFrequencies() | bpp::Simplex | inline |
| getFrom(const std::string &name) const | bpp::AbstractParameterAliasable | |
| getIndependentParameters() const | bpp::AbstractParameterAliasable | inlinevirtual |
| getMethod() const | bpp::Simplex | inline |
| getNamespace() const | bpp::AbstractParametrizable | inlinevirtual |
| getNumberOfIndependentParameters() const | bpp::AbstractParameterAliasable | inlinevirtual |
| getNumberOfParameters() const | bpp::AbstractParametrizable | inlinevirtual |
| getParameter(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
| getParameter_(const std::string &name) | bpp::AbstractParametrizable | inlineprotected |
| getParameter_(size_t index) | bpp::AbstractParametrizable | inlineprotected |
| getParameter_(size_t index) const | bpp::AbstractParametrizable | inlineprotected |
| getParameterNameWithoutNamespace(const std::string &name) const | bpp::AbstractParametrizable | virtual |
| getParameters() const | bpp::AbstractParametrizable | inlinevirtual |
| getParameters_() | bpp::AbstractParametrizable | inlineprotected |
| getParameterValue(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
| getParameterWithNamespace_(const std::string &name) | bpp::AbstractParametrizable | inlineprotected |
| getParameterWithNamespace_(const std::string &name) const | bpp::AbstractParametrizable | inlineprotected |
| hasParameter(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
| matchParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
| method_ | bpp::Simplex | private |
| operator=(const AbstractParameterAliasable &ap) | bpp::AbstractParameterAliasable | |
| ParameterAliasable() | bpp::ParameterAliasable | inline |
| Parametrizable() | bpp::Parametrizable | inline |
| prob(size_t i) const | bpp::Simplex | inline |
| resetParameters_() | bpp::AbstractParameterAliasable | inlineprotected |
| setAllParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
| setFrequencies(const std::vector< double > &) | bpp::Simplex | |
| setNamespace(const std::string &prefix) | bpp::AbstractParameterAliasable | virtual |
| setParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
| setParameterValue(const std::string &name, double value) | bpp::AbstractParametrizable | inlinevirtual |
| Simplex(size_t dim, unsigned short method=0, bool allowNull=false, const std::string &name="Simplex.") | bpp::Simplex | |
| Simplex(const std::vector< double > &probas, unsigned short method=0, bool allowNull=false, const std::string &name="Simplex.") | bpp::Simplex | |
| unaliasParameters(const std::string &p1, const std::string &p2) | bpp::AbstractParameterAliasable | virtual |
| valpha_ | bpp::Simplex | private |
| vProb_ | bpp::Simplex | private |
| ~AbstractParameterAliasable() | bpp::AbstractParameterAliasable | virtual |
| ~AbstractParametrizable() | bpp::AbstractParametrizable | inlinevirtual |
| ~Clonable() | bpp::Clonable | inlinevirtual |
| ~ParameterAliasable() | bpp::ParameterAliasable | inlinevirtual |
| ~Parametrizable() | bpp::Parametrizable | inlinevirtual |
| ~Simplex() | bpp::Simplex | inlinevirtual |