AbstractParameterAliasable(const std::string &prefix) | bpp::AbstractParameterAliasable | inline |
AbstractParameterAliasable(const AbstractParameterAliasable &ap) | bpp::AbstractParameterAliasable | |
AbstractParametrizable(const std::string &prefix) | bpp::AbstractParametrizable | inline |
addParameter_(Parameter *parameter) | bpp::AbstractParameterAliasable | inlineprotected |
addParameters_(const ParameterList ¶meters) | bpp::AbstractParameterAliasable | inlineprotected |
aliasParameters(const std::string &p1, const std::string &p2) | bpp::AbstractParameterAliasable | virtual |
aliasParameters(std::map< std::string, std::string > &unparsedParams, bool verbose) | bpp::AbstractParameterAliasable | virtual |
Clonable() | bpp::Clonable | inline |
clone() const | bpp::Simplex | inlinevirtual |
deleteParameter_(size_t index) | bpp::AbstractParameterAliasable | inlineprotected |
deleteParameter_(std::string &name) | bpp::AbstractParameterAliasable | inlineprotected |
deleteParameters_(const std::vector< std::string > &names) | bpp::AbstractParameterAliasable | inlineprotected |
dim_ | bpp::Simplex | private |
dimension() const | bpp::Simplex | inline |
fireParameterChanged(const ParameterList ¶meters) | bpp::Simplex | virtual |
getAlias(const std::string &name) const | bpp::AbstractParameterAliasable | virtual |
getAliasedParameters(const ParameterList &pl) const | bpp::AbstractParameterAliasable | |
getFrequencies() const | bpp::Simplex | inline |
getFrequencies() | bpp::Simplex | inline |
getFrom(const std::string &name) const | bpp::AbstractParameterAliasable | |
getIndependentParameters() const | bpp::AbstractParameterAliasable | inlinevirtual |
getMethod() const | bpp::Simplex | inline |
getNamespace() const | bpp::AbstractParametrizable | inlinevirtual |
getNumberOfIndependentParameters() const | bpp::AbstractParameterAliasable | inlinevirtual |
getNumberOfParameters() const | bpp::AbstractParametrizable | inlinevirtual |
getParameter(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
getParameter_(const std::string &name) | bpp::AbstractParametrizable | inlineprotected |
getParameter_(size_t index) | bpp::AbstractParametrizable | inlineprotected |
getParameter_(size_t index) const | bpp::AbstractParametrizable | inlineprotected |
getParameterNameWithoutNamespace(const std::string &name) const | bpp::AbstractParametrizable | virtual |
getParameters() const | bpp::AbstractParametrizable | inlinevirtual |
getParameters_() | bpp::AbstractParametrizable | inlineprotected |
getParameterValue(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
getParameterWithNamespace_(const std::string &name) | bpp::AbstractParametrizable | inlineprotected |
getParameterWithNamespace_(const std::string &name) const | bpp::AbstractParametrizable | inlineprotected |
hasParameter(const std::string &name) const | bpp::AbstractParametrizable | inlinevirtual |
matchParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
method_ | bpp::Simplex | private |
operator=(const AbstractParameterAliasable &ap) | bpp::AbstractParameterAliasable | |
ParameterAliasable() | bpp::ParameterAliasable | inline |
Parametrizable() | bpp::Parametrizable | inline |
prob(size_t i) const | bpp::Simplex | inline |
resetParameters_() | bpp::AbstractParameterAliasable | inlineprotected |
setAllParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
setFrequencies(const std::vector< double > &) | bpp::Simplex | |
setNamespace(const std::string &prefix) | bpp::AbstractParameterAliasable | virtual |
setParametersValues(const ParameterList ¶meters) | bpp::AbstractParametrizable | inlinevirtual |
setParameterValue(const std::string &name, double value) | bpp::AbstractParametrizable | inlinevirtual |
Simplex(size_t dim, unsigned short method=0, bool allowNull=false, const std::string &name="Simplex.") | bpp::Simplex | |
Simplex(const std::vector< double > &probas, unsigned short method=0, bool allowNull=false, const std::string &name="Simplex.") | bpp::Simplex | |
unaliasParameters(const std::string &p1, const std::string &p2) | bpp::AbstractParameterAliasable | virtual |
valpha_ | bpp::Simplex | private |
vProb_ | bpp::Simplex | private |
~AbstractParameterAliasable() | bpp::AbstractParameterAliasable | virtual |
~AbstractParametrizable() | bpp::AbstractParametrizable | inlinevirtual |
~Clonable() | bpp::Clonable | inlinevirtual |
~ParameterAliasable() | bpp::ParameterAliasable | inlinevirtual |
~Parametrizable() | bpp::Parametrizable | inlinevirtual |
~Simplex() | bpp::Simplex | inlinevirtual |