bpp::MaximumLikelihoodModelFitMafStatistics Member List

This is the complete list of members for bpp::MaximumLikelihoodModelFitMafStatistics, including all inherited members.

compute(const MafBlock &block)	bpp::MaximumLikelihoodModelFitMafStatistics
fixedParameters_	bpp::MaximumLikelihoodModelFitMafStatistics	private
gapsAsUnresolved_	bpp::MaximumLikelihoodModelFitMafStatistics	private
getFullName() const	bpp::MaximumLikelihoodModelFitMafStatistics	inline
getShortName() const	bpp::MaximumLikelihoodModelFitMafStatistics	inline
getSupportedTags() const	bpp::MaximumLikelihoodModelFitMafStatistics	inline
init_()	bpp::MaximumLikelihoodModelFitMafStatistics	private
initParameters_	bpp::MaximumLikelihoodModelFitMafStatistics	private
MaximumLikelihoodModelFitMafStatistics(SubstitutionModel *model, DiscreteDistribution *rDist, NucleotideFrequenciesSet *rootFreqs, const std::string &treePropertyIn, const std::vector< std::string > &parametersOut, const ParameterList &fixedParameters, bool reestimateBrLen=true, double propGapsToKeep=0, bool gapsAsUnresolved=true)	bpp::MaximumLikelihoodModelFitMafStatistics	inline
MaximumLikelihoodModelFitMafStatistics(SubstitutionModel *model, DiscreteDistribution *rDist, NucleotideFrequenciesSet *rootFreqs, const Tree *tree, const std::vector< std::string > &parametersOut, const ParameterList &fixedParameters, bool reestimateBrLen=true, double propGapsToKeep=0, bool gapsAsUnresolved=true)	bpp::MaximumLikelihoodModelFitMafStatistics	inline
MaximumLikelihoodModelFitMafStatistics(const MaximumLikelihoodModelFitMafStatistics &mafstat)	bpp::MaximumLikelihoodModelFitMafStatistics	inlineprivate
model_	bpp::MaximumLikelihoodModelFitMafStatistics	private
modelSet_	bpp::MaximumLikelihoodModelFitMafStatistics	private
NO_PROPERTY	bpp::MaximumLikelihoodModelFitMafStatistics	static
operator=(const MaximumLikelihoodModelFitMafStatistics &mafstat)	bpp::MaximumLikelihoodModelFitMafStatistics	inlineprivate
parametersOut_	bpp::MaximumLikelihoodModelFitMafStatistics	private
propGapsToKeep_	bpp::MaximumLikelihoodModelFitMafStatistics	private
rDist_	bpp::MaximumLikelihoodModelFitMafStatistics	private
reestimateBrLen_	bpp::MaximumLikelihoodModelFitMafStatistics	private
rootFreqs_	bpp::MaximumLikelihoodModelFitMafStatistics	private
tree_	bpp::MaximumLikelihoodModelFitMafStatistics	private
treePropertyIn_	bpp::MaximumLikelihoodModelFitMafStatistics	private