bpp::AAInteriorSubstitutionRegister Member List

This is the complete list of members for bpp::AAInteriorSubstitutionRegister, including all inherited members.

AAInteriorSubstitutionRegister(const CodonSubstitutionModel *model)	bpp::AAInteriorSubstitutionRegister	inline
AbstractSubstitutionRegister(const SubstitutionModel *model)	bpp::AbstractSubstitutionRegister	inline
AbstractSubstitutionRegister(const AbstractSubstitutionRegister &asr)	bpp::AbstractSubstitutionRegister	inline
categoryCorrespondance_	bpp::AAInteriorSubstitutionRegister	private
clone() const	bpp::AAInteriorSubstitutionRegister	inlinevirtual
GeneralSubstitutionRegister(const SubstitutionModel *model)	bpp::GeneralSubstitutionRegister	inline
GeneralSubstitutionRegister(const SubstitutionModel *model, const RowMatrix< size_t > &matrix)	bpp::GeneralSubstitutionRegister	inline
GeneralSubstitutionRegister(const GeneralSubstitutionRegister &gsr)	bpp::GeneralSubstitutionRegister	inline
getAlphabet() const	bpp::AbstractSubstitutionRegister	inlinevirtual
getNumberOfSubstitutionTypes() const	bpp::GeneralSubstitutionRegister	inlinevirtual
getSubstitutionModel() const	bpp::AbstractSubstitutionRegister	inlinevirtual
getType(size_t i, size_t j) const	bpp::GeneralSubstitutionRegister	inlinevirtual
getTypeName(size_t type) const	bpp::AAInteriorSubstitutionRegister	inlinevirtual
matrix_	bpp::GeneralSubstitutionRegister	protected
model_	bpp::AbstractSubstitutionRegister	protected
operator=(const GeneralSubstitutionRegister &gsr)	bpp::GeneralSubstitutionRegister	inline
bpp::AbstractSubstitutionRegister::operator=(const AbstractSubstitutionRegister &asr)	bpp::AbstractSubstitutionRegister	inline
size_	bpp::GeneralSubstitutionRegister	protected
SubstitutionRegister()	bpp::SubstitutionRegister	inline
types_	bpp::GeneralSubstitutionRegister	protected
updateTypes_()	bpp::GeneralSubstitutionRegister	protected
~AAInteriorSubstitutionRegister()	bpp::AAInteriorSubstitutionRegister	inline
~AbstractSubstitutionRegister()	bpp::AbstractSubstitutionRegister	inlinevirtual
~GeneralSubstitutionRegister()	bpp::GeneralSubstitutionRegister	inlinevirtual
~SubstitutionRegister()	bpp::SubstitutionRegister	inlinevirtual