bpp::AbstractAgglomerativeDistanceMethod Member List

This is the complete list of members for bpp::AbstractAgglomerativeDistanceMethod, including all inherited members.

AbstractAgglomerativeDistanceMethod(bool verbose=true, bool rootTree=false)	bpp::AbstractAgglomerativeDistanceMethod	inline
AbstractAgglomerativeDistanceMethod(const DistanceMatrix &matrix, bool verbose=true, bool rootTree=false)	bpp::AbstractAgglomerativeDistanceMethod	inline
AbstractAgglomerativeDistanceMethod(const AbstractAgglomerativeDistanceMethod &a)	bpp::AbstractAgglomerativeDistanceMethod	inline
AgglomerativeDistanceMethod()	bpp::AgglomerativeDistanceMethod	inline
computeBranchLengthsForPair(const std::vector< size_t > &pair)=0	bpp::AbstractAgglomerativeDistanceMethod	protectedpure virtual
computeDistancesFromPair(const std::vector< size_t > &pair, const std::vector< double > &branchLengths, size_t pos)=0	bpp::AbstractAgglomerativeDistanceMethod	protectedpure virtual
computeTree()	bpp::AbstractAgglomerativeDistanceMethod	virtual
currentNodes_	bpp::AbstractAgglomerativeDistanceMethod	protected
DistanceMethod()	bpp::DistanceMethod	inline
finalStep(int idRoot)=0	bpp::AbstractAgglomerativeDistanceMethod	protectedpure virtual
getBestPair()=0	bpp::AbstractAgglomerativeDistanceMethod	protectedpure virtual
getLeafNode(int id, const std::string &name)	bpp::AbstractAgglomerativeDistanceMethod	protectedvirtual
getName() const =0	bpp::DistanceMethod	pure virtual
getParentNode(int id, Node *son1, Node *son2)	bpp::AbstractAgglomerativeDistanceMethod	protectedvirtual
getTree() const	bpp::AbstractAgglomerativeDistanceMethod	inlinevirtual
isVerbose() const	bpp::AbstractAgglomerativeDistanceMethod	inlinevirtual
matrix_	bpp::AbstractAgglomerativeDistanceMethod	protected
operator=(const AbstractAgglomerativeDistanceMethod &a)	bpp::AbstractAgglomerativeDistanceMethod	inline
rootTree_	bpp::AbstractAgglomerativeDistanceMethod	protected
setDistanceMatrix(const DistanceMatrix &matrix)	bpp::AbstractAgglomerativeDistanceMethod	virtual
setVerbose(bool yn)	bpp::AbstractAgglomerativeDistanceMethod	inlinevirtual
tree_	bpp::AbstractAgglomerativeDistanceMethod	protected
verbose_	bpp::AbstractAgglomerativeDistanceMethod	protected
~AbstractAgglomerativeDistanceMethod()	bpp::AbstractAgglomerativeDistanceMethod	inlinevirtual
~AgglomerativeDistanceMethod()	bpp::AgglomerativeDistanceMethod	inlinevirtual
~DistanceMethod()	bpp::DistanceMethod	inlinevirtual