bpp::AbstractFrequenciesSet Member List

This is the complete list of members for bpp::AbstractFrequenciesSet, including all inherited members.

AbstractFrequenciesSet(StateMap *stateMap, const std::string &prefix, const std::string &name)	bpp::AbstractFrequenciesSet	inline
AbstractFrequenciesSet(const AbstractFrequenciesSet &af)	bpp::AbstractFrequenciesSet	inline
alphabet_	bpp::AbstractFrequenciesSet	private
clone() const =0	bpp::AbstractFrequenciesSet	pure virtual
freq_	bpp::AbstractFrequenciesSet	private
FREQUENCE_CONSTRAINT_MILLI	bpp::FrequenciesSet	static
FREQUENCE_CONSTRAINT_SMALL	bpp::FrequenciesSet	static
getAlphabet() const	bpp::AbstractFrequenciesSet	inlinevirtual
getAlphabetStatesFrequencies() const	bpp::AbstractFrequenciesSet	virtual
getFreq_(size_t i)	bpp::AbstractFrequenciesSet	inlineprotected
getFreq_(size_t i) const	bpp::AbstractFrequenciesSet	inlineprotected
getFrequencies() const	bpp::AbstractFrequenciesSet	inlinevirtual
getFrequencies_()	bpp::AbstractFrequenciesSet	inlineprotected
getName() const	bpp::AbstractFrequenciesSet	inlinevirtual
getNumberOfFrequencies() const	bpp::AbstractFrequenciesSet	inlinevirtual
getStateMap() const	bpp::AbstractFrequenciesSet	inlinevirtual
name_	bpp::AbstractFrequenciesSet	private
normalize()	bpp::AbstractFrequenciesSet	inline
operator=(const AbstractFrequenciesSet &af)	bpp::AbstractFrequenciesSet	inline
setFrequencies(const std::vector< double > &frequencies)=0	bpp::FrequenciesSet	pure virtual
setFrequencies_(const std::vector< double > &frequencies)	bpp::AbstractFrequenciesSet	inlineprotected
setFrequenciesFromAlphabetStatesFrequencies(const std::map< int, double > &frequencies)	bpp::AbstractFrequenciesSet	virtual
stateMap_	bpp::AbstractFrequenciesSet	private