bpp-phyl  2.2.0
bpp::AbstractReward Member List

This is the complete list of members for bpp::AbstractReward, including all inherited members.

AbstractReward(AlphabetIndex1 *alphIndex)bpp::AbstractRewardinline
AbstractReward(const AbstractReward &ar)bpp::AbstractRewardinline
alphabetIndexHasChanged()=0bpp::AbstractRewardprotectedpure virtual
alphIndex_bpp::AbstractRewardprotected
clone() const =0bpp::Rewardpure virtual
getAllRewards(double length) const =0bpp::Rewardpure virtual
getAlphabet() constbpp::Rewardinlinevirtual
getAlphabetIndex() constbpp::AbstractRewardinlinevirtual
getAlphabetIndex()bpp::AbstractRewardinlinevirtual
getNumberOfStates() constbpp::Rewardinlinevirtual
getReward(size_t initialState, size_t finalState, double length) const =0bpp::Rewardpure virtual
hasAlphabetIndex() constbpp::AbstractRewardinlinevirtual
operator=(const AbstractReward &ar)bpp::AbstractRewardinline
Reward()bpp::Rewardinline
setAlphabetIndex(AlphabetIndex1 *alphIndex)bpp::AbstractRewardinlinevirtual
setSubstitutionModel(const SubstitutionModel *model)=0bpp::Rewardpure virtual
~AbstractReward()bpp::AbstractRewardinline
~Reward()bpp::Rewardinlinevirtual