bpp::AbstractSubstitutionMapping Member List

This is the complete list of members for bpp::AbstractSubstitutionMapping, including all inherited members.

AbstractMapping(const Tree &tree)	bpp::AbstractMapping	inline
AbstractMapping(const AbstractMapping &absm)	bpp::AbstractMapping	inline
AbstractSubstitutionMapping(const Tree &tree)	bpp::AbstractSubstitutionMapping	inline
AbstractSubstitutionMapping(const AbstractSubstitutionMapping &absm)	bpp::AbstractSubstitutionMapping	inline
clone() const =0	bpp::AbstractSubstitutionMapping	pure virtual
bpp::getBranchLengths() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getBranchLengths() const	bpp::AbstractMapping	inlinevirtual
getNode(size_t nodeIndex) const	bpp::AbstractMapping	inlinevirtual
bpp::getNodeIndex(int nodeId) const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getNodeIndex(int nodeId) const	bpp::AbstractMapping	inlinevirtual
bpp::getNumberOfBranches() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getNumberOfBranches() const	bpp::AbstractMapping	inlinevirtual
bpp::getNumberOfSites() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getNumberOfSites() const	bpp::AbstractMapping	inlinevirtual
getNumberOfSubstitutionTypes() const =0	bpp::SubstitutionMapping	pure virtual
bpp::getSitePosition(size_t index) const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getSitePosition(size_t index) const	bpp::AbstractMapping	inlinevirtual
bpp::getTree() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getTree() const	bpp::AbstractMapping	inlinevirtual
bpp::isEmpty() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::isEmpty() const	bpp::AbstractMapping	inlinevirtual
Mapping()	bpp::Mapping	inline
operator()(size_t nodeIndex, size_t siteIndex, size_t type)=0	bpp::SubstitutionMapping	pure virtual
operator()(size_t nodeIndex, size_t siteIndex, size_t type) const =0	bpp::SubstitutionMapping	pure virtual
operator=(const AbstractSubstitutionMapping &absm)	bpp::AbstractSubstitutionMapping	inline
bpp::AbstractMapping::operator=(const AbstractMapping &absm)	bpp::AbstractMapping	inline
setNumberOfSites(size_t numberOfSites)	bpp::AbstractMapping	inlinevirtual
bpp::setSitePosition(size_t index, int position)=0	bpp::Mapping	pure virtual
bpp::AbstractMapping::setSitePosition(size_t index, int position)	bpp::AbstractMapping	inlinevirtual
setTree(const Tree &tree)	bpp::AbstractMapping	inline
SubstitutionMapping()	bpp::SubstitutionMapping	inline
~AbstractMapping()	bpp::AbstractMapping	inlinevirtual
~AbstractSubstitutionMapping()	bpp::AbstractSubstitutionMapping	inlinevirtual
~Mapping()	bpp::Mapping	inlinevirtual
~SubstitutionMapping()	bpp::SubstitutionMapping	inlinevirtual