bpp::AbstractTreeParsimonyScore Member List

This is the complete list of members for bpp::AbstractTreeParsimonyScore, including all inherited members.

AbstractTreeParsimonyScore(const Tree &tree, const SiteContainer &data, bool verbose, bool includeGaps)	bpp::AbstractTreeParsimonyScore
AbstractTreeParsimonyScore(const Tree &tree, const SiteContainer &data, const StateMap *statesMap, bool verbose)	bpp::AbstractTreeParsimonyScore
AbstractTreeParsimonyScore(const AbstractTreeParsimonyScore &tp)	bpp::AbstractTreeParsimonyScore	inline
alphabet_	bpp::AbstractTreeParsimonyScore	private
clone() const =0	bpp::TreeParsimonyScore	pure virtual
data_	bpp::AbstractTreeParsimonyScore	private
getScore() const =0	bpp::TreeParsimonyScore	pure virtual
getScoreForEachSite() const	bpp::AbstractTreeParsimonyScore	virtual
getScoreForSite(size_t site) const =0	bpp::TreeParsimonyScore	pure virtual
getStateMap() const	bpp::AbstractTreeParsimonyScore	inlinevirtual
getTree() const	bpp::AbstractTreeParsimonyScore	inlinevirtual
getTreeP_() const	bpp::AbstractTreeParsimonyScore	inlineprotected
getTreeP_()	bpp::AbstractTreeParsimonyScore	inlineprotected
init_(const SiteContainer &data, bool verbose)	bpp::AbstractTreeParsimonyScore	private
nbStates_	bpp::AbstractTreeParsimonyScore	private
operator=(const AbstractTreeParsimonyScore &tp)	bpp::AbstractTreeParsimonyScore	inline
statesMap_	bpp::AbstractTreeParsimonyScore	private
tree_	bpp::AbstractTreeParsimonyScore	private
TreeParsimonyScore()	bpp::TreeParsimonyScore	inline
~AbstractTreeParsimonyScore()	bpp::AbstractTreeParsimonyScore	inlinevirtual
~TreeParsimonyScore()	bpp::TreeParsimonyScore	inlinevirtual