bpp::AbstractWeightedSubstitutionCount Member List

This is the complete list of members for bpp::AbstractWeightedSubstitutionCount, including all inherited members.

AbstractWeightedSubstitutionCount(const AlphabetIndex2 *weights, bool ownWeights)	bpp::AbstractWeightedSubstitutionCount	inline
AbstractWeightedSubstitutionCount(const AbstractWeightedSubstitutionCount &index)	bpp::AbstractWeightedSubstitutionCount	inline
clone() const =0	bpp::SubstitutionCount	pure virtual
getAllNumbersOfSubstitutions(double length, size_t type) const =0	bpp::SubstitutionCount	pure virtual
getAlphabet() const	bpp::SubstitutionCount	inlinevirtual
getNumberOfStates() const	bpp::SubstitutionCount	inlinevirtual
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type) const =0	bpp::SubstitutionCount	pure virtual
getNumberOfSubstitutionsForEachType(size_t initialState, size_t finalState, double length) const =0	bpp::SubstitutionCount	pure virtual
getNumberOfSubstitutionTypes() const	bpp::SubstitutionCount	inlinevirtual
getSubstitutionRegister() const =0	bpp::SubstitutionCount	pure virtual
getSubstitutionRegister()=0	bpp::SubstitutionCount	pure virtual
getWeights() const	bpp::AbstractWeightedSubstitutionCount	inlinevirtual
hasSubstitutionRegister() const =0	bpp::SubstitutionCount	pure virtual
hasWeights() const	bpp::AbstractWeightedSubstitutionCount	inlinevirtual
operator=(const AbstractWeightedSubstitutionCount &index)	bpp::AbstractWeightedSubstitutionCount	inline
ownWeights_	bpp::AbstractWeightedSubstitutionCount	protected
setSubstitutionModel(const SubstitutionModel *model)=0	bpp::SubstitutionCount	pure virtual
setSubstitutionRegister(SubstitutionRegister *reg)=0	bpp::SubstitutionCount	pure virtual
setWeights(const AlphabetIndex2 *weights, bool ownWeights)	bpp::AbstractWeightedSubstitutionCount	virtual
SubstitutionCount()	bpp::SubstitutionCount	inline
weights_	bpp::AbstractWeightedSubstitutionCount	protected
weightsHaveChanged()=0	bpp::AbstractWeightedSubstitutionCount	protectedpure virtual
~AbstractWeightedSubstitutionCount()	bpp::AbstractWeightedSubstitutionCount	inlinevirtual
~SubstitutionCount()	bpp::SubstitutionCount	inlinevirtual