bpp-phyl
2.2.0
bpp::CanonicalStateMap Member List
This is the complete list of members for
bpp::CanonicalStateMap
, including all inherited members.
AbstractStateMap
(const Alphabet *alphabet)
bpp::AbstractStateMap
inline
AbstractStateMap
(const AbstractStateMap &absm)
bpp::AbstractStateMap
inline
alphabet_
bpp::AbstractStateMap
protected
CanonicalStateMap
(const Alphabet *alphabet, bool includeGaps)
bpp::CanonicalStateMap
CanonicalStateMap
(const StateMap &sm, bool includeGaps)
bpp::CanonicalStateMap
clone
() const
bpp::CanonicalStateMap
inline
virtual
getAlphabet
() const
bpp::AbstractStateMap
inline
virtual
getAlphabetStateAsChar
(size_t index) const
bpp::AbstractStateMap
inline
virtual
getAlphabetStateAsInt
(size_t index) const
bpp::AbstractStateMap
inline
virtual
getAlphabetStates
() const
bpp::AbstractStateMap
inline
virtual
getModelStates
(int code) const
bpp::AbstractStateMap
inline
virtual
getModelStates
(const std::string &code) const
bpp::AbstractStateMap
inline
virtual
getNumberOfModelStates
() const
bpp::AbstractStateMap
inline
virtual
operator=
(const AbstractStateMap &absm)
bpp::AbstractStateMap
inline
states_
bpp::AbstractStateMap
protected
~StateMap
()
bpp::StateMap
inline
virtual
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