bpp-phyl  2.2.0
bpp::CoalaCore Member List

This is the complete list of members for bpp::CoalaCore, including all inherited members.

clone() constbpp::CoalaCoreinline
CoalaCore(size_t nbAxes=0, const std::string &exch="LG08")bpp::CoalaCore
colWeights_bpp::CoalaCoreprotected
computeCOA(const SequenceContainer &data, bool param=true)bpp::CoalaCoreprotected
exch_bpp::CoalaCoreprotected
getColumnWeights() constbpp::CoalaCoreinline
getNbrOfAxes() constbpp::CoalaCoreinline
getRowCoordinates() constbpp::CoalaCoreinline
getTppalAxesMatrix() constbpp::CoalaCoreinline
init_bpp::CoalaCoreprotected
nbrOfAxes_bpp::CoalaCoreprotected
P_bpp::CoalaCoreprotected
paramValues_bpp::CoalaCoreprotected
prodMatrixVector(RowMatrix< double > &P, std::vector< double > &V)bpp::CoalaCoreprotected
R_bpp::CoalaCoreprotected
setParamValues(const std::map< std::string, std::string > &valuesSettings)bpp::CoalaCoreinline
~CoalaCore()bpp::CoalaCoreinlinevirtual