bpp::CodonFrequenciesSet Member List

This is the complete list of members for bpp::CodonFrequenciesSet, including all inherited members.

clone() const =0	bpp::CodonFrequenciesSet	pure virtual
F0	bpp::CodonFrequenciesSet	static
F1X4	bpp::CodonFrequenciesSet	static
F3X4	bpp::CodonFrequenciesSet	static
F61	bpp::CodonFrequenciesSet	static
FREQUENCE_CONSTRAINT_MILLI	bpp::FrequenciesSet	static
FREQUENCE_CONSTRAINT_SMALL	bpp::FrequenciesSet	static
getAlphabet() const =0	bpp::CodonFrequenciesSet	pure virtual
getAlphabetStatesFrequencies() const =0	bpp::FrequenciesSet	pure virtual
getFrequencies() const =0	bpp::FrequenciesSet	pure virtual
getFrequenciesSetForCodons(short option, const GeneticCode *gCode, const std::string &mgmtStopFreq="quadratic", unsigned short method=1)	bpp::CodonFrequenciesSet	static
getGeneticCode() const =0	bpp::CodonFrequenciesSet	pure virtual
getName() const =0	bpp::FrequenciesSet	pure virtual
getNumberOfFrequencies() const =0	bpp::FrequenciesSet	pure virtual
getStateMap() const =0	bpp::FrequenciesSet	pure virtual
setFrequencies(const std::vector< double > &frequencies)=0	bpp::FrequenciesSet	pure virtual
setFrequenciesFromAlphabetStatesFrequencies(const std::map< int, double > &frequencies)=0	bpp::FrequenciesSet	pure virtual