bpp::ComprehensiveSubstitutionRegister Member List

This is the complete list of members for bpp::ComprehensiveSubstitutionRegister, including all inherited members.

AbstractSubstitutionRegister(const SubstitutionModel *model)	bpp::AbstractSubstitutionRegister	inline
AbstractSubstitutionRegister(const AbstractSubstitutionRegister &asr)	bpp::AbstractSubstitutionRegister	inline
allowWithin() const	bpp::CategorySubstitutionRegister	inlinevirtual
categories_	bpp::CategorySubstitutionRegister	mutableprotected
categoryNames_	bpp::CategorySubstitutionRegister	protected
CategorySubstitutionRegister(const SubstitutionModel *model, bool within=false)	bpp::CategorySubstitutionRegister	inline
clone() const	bpp::ComprehensiveSubstitutionRegister	inlinevirtual
ComprehensiveSubstitutionRegister(const SubstitutionModel *model, bool within=false)	bpp::ComprehensiveSubstitutionRegister	inline
getAlphabet() const	bpp::AbstractSubstitutionRegister	inlinevirtual
getCategory(size_t state) const	bpp::CategorySubstitutionRegister	inlinevirtual
getCategoryFrom(size_t type) const	bpp::CategorySubstitutionRegister	inlinevirtual
getCategoryName(size_t category) const	bpp::CategorySubstitutionRegister	inlinevirtual
getCategoryTo(size_t type) const	bpp::CategorySubstitutionRegister	inlinevirtual
getNumberOfCategories() const	bpp::CategorySubstitutionRegister	inline
getNumberOfSubstitutionTypes() const	bpp::CategorySubstitutionRegister	inlinevirtual
getSubstitutionModel() const	bpp::AbstractSubstitutionRegister	inlinevirtual
getType(size_t fromState, size_t toState) const	bpp::CategorySubstitutionRegister	inlinevirtual
getTypeName(size_t type) const	bpp::CategorySubstitutionRegister	inlinevirtual
index_	bpp::CategorySubstitutionRegister	protected
model_	bpp::AbstractSubstitutionRegister	protected
nbCategories_	bpp::CategorySubstitutionRegister	protected
operator=(const AbstractSubstitutionRegister &asr)	bpp::AbstractSubstitutionRegister	inline
revIndex_	bpp::CategorySubstitutionRegister	protected
setCategories(const std::map< int, T > &categories)	bpp::CategorySubstitutionRegister	inlineprotected
SubstitutionRegister()	bpp::SubstitutionRegister	inline
within_	bpp::CategorySubstitutionRegister	protected
~AbstractSubstitutionRegister()	bpp::AbstractSubstitutionRegister	inlinevirtual
~SubstitutionRegister()	bpp::SubstitutionRegister	inlinevirtual