bpp::DRTreeParsimonyScore Member List

This is the complete list of members for bpp::DRTreeParsimonyScore, including all inherited members.

AbstractTreeParsimonyScore(const Tree &tree, const SiteContainer &data, bool verbose, bool includeGaps)	bpp::AbstractTreeParsimonyScore
AbstractTreeParsimonyScore(const Tree &tree, const SiteContainer &data, const StateMap *statesMap, bool verbose)	bpp::AbstractTreeParsimonyScore
AbstractTreeParsimonyScore(const AbstractTreeParsimonyScore &tp)	bpp::AbstractTreeParsimonyScore	inline
clone() const	bpp::DRTreeParsimonyScore	inlinevirtual
computeScores()	bpp::DRTreeParsimonyScore	protectedvirtual
computeScoresForNode(const DRTreeParsimonyNodeData &pData, std::vector< Bitset > &rBitsets, std::vector< unsigned int > &rScores)	bpp::DRTreeParsimonyScore	static
computeScoresFromArrays(const std::vector< const std::vector< Bitset > *> &iBitsets, const std::vector< const std::vector< unsigned int > *> &iScores, std::vector< Bitset > &oBitsets, std::vector< unsigned int > &oScores)	bpp::DRTreeParsimonyScore	static
computeScoresPostorder(const Node *)	bpp::DRTreeParsimonyScore	protectedvirtual
computeScoresPostorderForNode(const DRTreeParsimonyNodeData &pData, std::vector< Bitset > &rBitsets, std::vector< unsigned int > &rScores)	bpp::DRTreeParsimonyScore	static
computeScoresPreorder(const Node *)	bpp::DRTreeParsimonyScore	protectedvirtual
computeScoresPreorderForNode(const DRTreeParsimonyNodeData &pData, const Node *source, std::vector< Bitset > &rBitsets, std::vector< unsigned int > &rScores)	bpp::DRTreeParsimonyScore	static
doNNI(int nodeId)	bpp::DRTreeParsimonyScore	virtual
DRTreeParsimonyScore(const Tree &tree, const SiteContainer &data, bool verbose=true, bool includeGaps=false)	bpp::DRTreeParsimonyScore
DRTreeParsimonyScore(const Tree &tree, const SiteContainer &data, const StateMap *statesMap, bool verbose=true)	bpp::DRTreeParsimonyScore
DRTreeParsimonyScore(const DRTreeParsimonyScore &tp)	bpp::DRTreeParsimonyScore
getScore() const	bpp::DRTreeParsimonyScore	virtual
getScoreForEachSite() const	bpp::AbstractTreeParsimonyScore	virtual
getScoreForSite(size_t site) const	bpp::DRTreeParsimonyScore	virtual
getStateMap() const	bpp::AbstractTreeParsimonyScore	inlinevirtual
getTopology() const	bpp::DRTreeParsimonyScore	inlinevirtual
getTopologyValue() const	bpp::DRTreeParsimonyScore	inlinevirtual
getTree() const	bpp::AbstractTreeParsimonyScore	inlinevirtual
getTreeP_() const	bpp::AbstractTreeParsimonyScore	inlineprotected
getTreeP_()	bpp::AbstractTreeParsimonyScore	inlineprotected
init_(const SiteContainer &data, bool verbose)	bpp::DRTreeParsimonyScore	private
nbDistinctSites_	bpp::DRTreeParsimonyScore	private
NNISearchable()	bpp::NNISearchable	inline
operator=(const DRTreeParsimonyScore &tp)	bpp::DRTreeParsimonyScore
bpp::AbstractTreeParsimonyScore::operator=(const AbstractTreeParsimonyScore &tp)	bpp::AbstractTreeParsimonyScore	inline
parsimonyData_	bpp::DRTreeParsimonyScore	private
testNNI(int nodeId) const	bpp::DRTreeParsimonyScore	virtual
topologyChangePerformed(const TopologyChangeEvent &event)	bpp::TopologyListener	inlinevirtual
topologyChangeSuccessful(const TopologyChangeEvent &event)	bpp::DRTreeParsimonyScore	inlinevirtual
topologyChangeTested(const TopologyChangeEvent &event)	bpp::DRTreeParsimonyScore	inlinevirtual
TopologyListener()	bpp::TopologyListener	inline
TreeParsimonyScore()	bpp::TreeParsimonyScore	inline
~AbstractTreeParsimonyScore()	bpp::AbstractTreeParsimonyScore	inlinevirtual
~DRTreeParsimonyScore()	bpp::DRTreeParsimonyScore	virtual
~NNISearchable()	bpp::NNISearchable	inlinevirtual
~TopologyListener()	bpp::TopologyListener	inlinevirtual
~TreeParsimonyScore()	bpp::TreeParsimonyScore	inlinevirtual