bpp::DecompositionReward Member List

This is the complete list of members for bpp::DecompositionReward, including all inherited members.

AbstractReward(AlphabetIndex1 *alphIndex)	bpp::AbstractReward	inline
AbstractReward(const AbstractReward &ar)	bpp::AbstractReward	inline
alphabetIndexHasChanged()	bpp::DecompositionReward	protectedvirtual
alphIndex_	bpp::AbstractReward	protected
bMatrice_	bpp::DecompositionReward	private
clone() const	bpp::DecompositionReward	inlinevirtual
computeBMatrice_()	bpp::DecompositionReward	private
computeEigen_()	bpp::DecompositionReward	private
computeProducts_()	bpp::DecompositionReward	private
computeRewards_(double length) const	bpp::DecompositionReward	protected
currentLength_	bpp::DecompositionReward	mutableprivate
DecompositionReward(const SubstitutionModel *model, AlphabetIndex1 *alphIndex)	bpp::DecompositionReward
DecompositionReward(const DecompositionReward &dr)	bpp::DecompositionReward	inline
getAllRewards(double length) const	bpp::DecompositionReward	virtual
getAlphabet() const	bpp::Reward	inlinevirtual
getAlphabetIndex() const	bpp::AbstractReward	inlinevirtual
getAlphabetIndex()	bpp::AbstractReward	inlinevirtual
getNumberOfStates() const	bpp::Reward	inlinevirtual
getReward(size_t initialState, size_t finalState, double length) const	bpp::DecompositionReward	virtual
hasAlphabetIndex() const	bpp::AbstractReward	inlinevirtual
insideProduct_	bpp::DecompositionReward	private
jFunction_(const std::vector< double > &lambda, double t, RowMatrix< double > &result) const	bpp::DecompositionReward	protected
jMat_	bpp::DecompositionReward	mutableprivate
lambda_	bpp::DecompositionReward	mutableprivate
model_	bpp::DecompositionReward	private
nbStates_	bpp::DecompositionReward	private
operator=(const DecompositionReward &dr)	bpp::DecompositionReward	inline
bpp::AbstractReward::operator=(const AbstractReward &ar)	bpp::AbstractReward	inline
resetStates_()	bpp::DecompositionReward	private
Reward()	bpp::Reward	inline
rewards_	bpp::DecompositionReward	mutableprivate
setAlphabetIndex(AlphabetIndex1 *alphIndex)	bpp::AbstractReward	inlinevirtual
setSubstitutionModel(const SubstitutionModel *model)	bpp::DecompositionReward	virtual
v_	bpp::DecompositionReward	mutableprivate
vInv_	bpp::DecompositionReward	mutableprivate
~AbstractReward()	bpp::AbstractReward	inline
~DecompositionReward()	bpp::DecompositionReward	inlinevirtual
~Reward()	bpp::Reward	inlinevirtual