bpp::DistanceEstimation Member List

This is the complete list of members for bpp::DistanceEstimation, including all inherited members.

clone() const	bpp::DistanceEstimation	inline
computeMatrix()	bpp::DistanceEstimation
defaultOptimizer_	bpp::DistanceEstimation	private
dist_	bpp::DistanceEstimation	private
DistanceEstimation(SubstitutionModel *model, DiscreteDistribution *rateDist, size_t verbose=1)	bpp::DistanceEstimation	inline
DistanceEstimation(SubstitutionModel *model, DiscreteDistribution *rateDist, const SiteContainer *sites, size_t verbose=1, bool computeMat=true)	bpp::DistanceEstimation	inline
DistanceEstimation(const DistanceEstimation &distanceEstimation)	bpp::DistanceEstimation	inline
getData() const	bpp::DistanceEstimation	inline
getMatrix() const	bpp::DistanceEstimation	inline
getOptimizer() const	bpp::DistanceEstimation	inline
getOptimizer()	bpp::DistanceEstimation	inline
getRateDistribution() const	bpp::DistanceEstimation	inline
getSubstitutionModel() const	bpp::DistanceEstimation	inline
getVerbose() const	bpp::DistanceEstimation	inline
hasRateDistribution() const	bpp::DistanceEstimation	inline
hasSubstitutionModel() const	bpp::DistanceEstimation	inline
init_()	bpp::DistanceEstimation	inlineprivate
model_	bpp::DistanceEstimation	private
operator=(const DistanceEstimation &distanceEstimation)	bpp::DistanceEstimation	inline
optimizer_	bpp::DistanceEstimation	private
parameters_	bpp::DistanceEstimation	private
rateDist_	bpp::DistanceEstimation	private
resetAdditionalParameters()	bpp::DistanceEstimation	inline
resetData()	bpp::DistanceEstimation	inline
resetOptimizer()	bpp::DistanceEstimation	inline
resetRateDistribution(DiscreteDistribution *rateDist=0)	bpp::DistanceEstimation	inline
resetSubstitutionModel(SubstitutionModel *model=0)	bpp::DistanceEstimation	inline
setAdditionalParameters(const ParameterList &parameters)	bpp::DistanceEstimation	inline
setData(const SiteContainer *sites)	bpp::DistanceEstimation	inline
setOptimizer(const Optimizer *optimizer)	bpp::DistanceEstimation	inline
setVerbose(size_t verbose)	bpp::DistanceEstimation	inline
sites_	bpp::DistanceEstimation	private
verbose_	bpp::DistanceEstimation	private
~DistanceEstimation()	bpp::DistanceEstimation	inlinevirtual