bpp-phyl
2.2.0
bpp::FixedFrequenciesSet Member List
This is the complete list of members for
bpp::FixedFrequenciesSet
, including all inherited members.
AbstractFrequenciesSet
(StateMap *stateMap, const std::string &prefix, const std::string &name)
bpp::AbstractFrequenciesSet
inline
AbstractFrequenciesSet
(const AbstractFrequenciesSet &af)
bpp::AbstractFrequenciesSet
inline
clone
() const
bpp::FixedFrequenciesSet
inline
virtual
fireParameterChanged
(const ParameterList ¶meters)
bpp::FixedFrequenciesSet
inline
protected
FixedFrequenciesSet
(StateMap *stateMap, const std::vector< double > &initFreqs, const std::string &name="Fixed")
bpp::FixedFrequenciesSet
FixedFrequenciesSet
(StateMap *stateMap, const std::string &name="Fixed")
bpp::FixedFrequenciesSet
FREQUENCE_CONSTRAINT_MILLI
bpp::FrequenciesSet
static
FREQUENCE_CONSTRAINT_SMALL
bpp::FrequenciesSet
static
getAlphabet
() const
bpp::AbstractFrequenciesSet
inline
virtual
getAlphabetStatesFrequencies
() const
bpp::AbstractFrequenciesSet
virtual
getFreq_
(size_t i)
bpp::AbstractFrequenciesSet
inline
protected
getFreq_
(size_t i) const
bpp::AbstractFrequenciesSet
inline
protected
getFrequencies
() const
bpp::AbstractFrequenciesSet
inline
virtual
getFrequencies_
()
bpp::AbstractFrequenciesSet
inline
protected
getName
() const
bpp::AbstractFrequenciesSet
inline
virtual
getNumberOfFrequencies
() const
bpp::AbstractFrequenciesSet
inline
virtual
getStateMap
() const
bpp::AbstractFrequenciesSet
inline
virtual
normalize
()
bpp::AbstractFrequenciesSet
inline
operator=
(const AbstractFrequenciesSet &af)
bpp::AbstractFrequenciesSet
inline
setFrequencies
(const std::vector< double > &frequencies)
bpp::FixedFrequenciesSet
virtual
setFrequencies_
(const std::vector< double > &frequencies)
bpp::AbstractFrequenciesSet
inline
protected
setFrequenciesFromAlphabetStatesFrequencies
(const std::map< int, double > &frequencies)
bpp::AbstractFrequenciesSet
virtual
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