bpp-phyl  2.2.0
bpp::FixedFrequenciesSet Member List

This is the complete list of members for bpp::FixedFrequenciesSet, including all inherited members.

AbstractFrequenciesSet(StateMap *stateMap, const std::string &prefix, const std::string &name)bpp::AbstractFrequenciesSetinline
AbstractFrequenciesSet(const AbstractFrequenciesSet &af)bpp::AbstractFrequenciesSetinline
clone() constbpp::FixedFrequenciesSetinlinevirtual
fireParameterChanged(const ParameterList &parameters)bpp::FixedFrequenciesSetinlineprotected
FixedFrequenciesSet(StateMap *stateMap, const std::vector< double > &initFreqs, const std::string &name="Fixed")bpp::FixedFrequenciesSet
FixedFrequenciesSet(StateMap *stateMap, const std::string &name="Fixed")bpp::FixedFrequenciesSet
FREQUENCE_CONSTRAINT_MILLIbpp::FrequenciesSetstatic
FREQUENCE_CONSTRAINT_SMALLbpp::FrequenciesSetstatic
getAlphabet() constbpp::AbstractFrequenciesSetinlinevirtual
getAlphabetStatesFrequencies() constbpp::AbstractFrequenciesSetvirtual
getFreq_(size_t i)bpp::AbstractFrequenciesSetinlineprotected
getFreq_(size_t i) constbpp::AbstractFrequenciesSetinlineprotected
getFrequencies() constbpp::AbstractFrequenciesSetinlinevirtual
getFrequencies_()bpp::AbstractFrequenciesSetinlineprotected
getName() constbpp::AbstractFrequenciesSetinlinevirtual
getNumberOfFrequencies() constbpp::AbstractFrequenciesSetinlinevirtual
getStateMap() constbpp::AbstractFrequenciesSetinlinevirtual
normalize()bpp::AbstractFrequenciesSetinline
operator=(const AbstractFrequenciesSet &af)bpp::AbstractFrequenciesSetinline
setFrequencies(const std::vector< double > &frequencies)bpp::FixedFrequenciesSetvirtual
setFrequencies_(const std::vector< double > &frequencies)bpp::AbstractFrequenciesSetinlineprotected
setFrequenciesFromAlphabetStatesFrequencies(const std::map< int, double > &frequencies)bpp::AbstractFrequenciesSetvirtual