bpp::MarginalAncestralStateReconstruction Member List

This is the complete list of members for bpp::MarginalAncestralStateReconstruction, including all inherited members.

alphabet_	bpp::MarginalAncestralStateReconstruction	private
AncestralStateReconstruction()	bpp::AncestralStateReconstruction	inline
clone() const	bpp::MarginalAncestralStateReconstruction	inline
getAllAncestralStates() const	bpp::MarginalAncestralStateReconstruction	virtual
getAncestralSequenceForNode(int nodeId, VVdouble *probs, bool sample) const	bpp::MarginalAncestralStateReconstruction
getAncestralSequenceForNode(int nodeId) const	bpp::MarginalAncestralStateReconstruction	inlinevirtual
getAncestralSequences() const	bpp::MarginalAncestralStateReconstruction	inlinevirtual
getAncestralSequences(bool sample) const	bpp::MarginalAncestralStateReconstruction
getAncestralStatesForNode(int nodeId, VVdouble &probs, bool sample) const	bpp::MarginalAncestralStateReconstruction
getAncestralStatesForNode(int nodeId) const	bpp::MarginalAncestralStateReconstruction	inlinevirtual
l_	bpp::MarginalAncestralStateReconstruction	private
likelihood_	bpp::MarginalAncestralStateReconstruction	private
MarginalAncestralStateReconstruction(const DRTreeLikelihood *drl)	bpp::MarginalAncestralStateReconstruction	inline
MarginalAncestralStateReconstruction(const MarginalAncestralStateReconstruction &masr)	bpp::MarginalAncestralStateReconstruction	inline
nbClasses_	bpp::MarginalAncestralStateReconstruction	private
nbDistinctSites_	bpp::MarginalAncestralStateReconstruction	private
nbSites_	bpp::MarginalAncestralStateReconstruction	private
nbStates_	bpp::MarginalAncestralStateReconstruction	private
operator=(const MarginalAncestralStateReconstruction &masr)	bpp::MarginalAncestralStateReconstruction	inline
r_	bpp::MarginalAncestralStateReconstruction	private
recursiveMarginalAncestralStates(const Node *node, std::map< int, std::vector< size_t > > &ancestors, AlignedSequenceContainer &data) const	bpp::MarginalAncestralStateReconstruction	private
rootPatternLinks_	bpp::MarginalAncestralStateReconstruction	private
tree_	bpp::MarginalAncestralStateReconstruction	private
~AncestralStateReconstruction()	bpp::AncestralStateReconstruction	inlinevirtual
~MarginalAncestralStateReconstruction()	bpp::MarginalAncestralStateReconstruction	inlinevirtual