bpp::OneJumpSubstitutionCount Member List

This is the complete list of members for bpp::OneJumpSubstitutionCount, including all inherited members.

AbstractSubstitutionCount(SubstitutionRegister *reg)	bpp::AbstractSubstitutionCount	inline
AbstractSubstitutionCount(const AbstractSubstitutionCount &asc)	bpp::AbstractSubstitutionCount	inline
clone() const	bpp::OneJumpSubstitutionCount	inlinevirtual
getAllNumbersOfSubstitutions(double length, size_t type=1) const	bpp::OneJumpSubstitutionCount	virtual
getAlphabet() const	bpp::SubstitutionCount	inlinevirtual
getNumberOfStates() const	bpp::SubstitutionCount	inlinevirtual
getNumberOfSubstitutions(size_t initialState, size_t finalState, double length, size_t type=1) const	bpp::OneJumpSubstitutionCount	inlinevirtual
getNumberOfSubstitutionsForEachType(size_t initialState, size_t finalState, double length) const	bpp::OneJumpSubstitutionCount	inlinevirtual
getNumberOfSubstitutionTypes() const	bpp::SubstitutionCount	inlinevirtual
getSubstitutionRegister() const	bpp::AbstractSubstitutionCount	inlinevirtual
getSubstitutionRegister()	bpp::AbstractSubstitutionCount	inlinevirtual
hasSubstitutionRegister() const	bpp::AbstractSubstitutionCount	inlinevirtual
model_	bpp::OneJumpSubstitutionCount	private
OneJumpSubstitutionCount(const SubstitutionModel *model)	bpp::OneJumpSubstitutionCount	inline
OneJumpSubstitutionCount(const OneJumpSubstitutionCount &ojsc)	bpp::OneJumpSubstitutionCount	inline
operator=(const OneJumpSubstitutionCount &ojsc)	bpp::OneJumpSubstitutionCount	inline
bpp::AbstractSubstitutionCount::operator=(const AbstractSubstitutionCount &asc)	bpp::AbstractSubstitutionCount	inline
register_	bpp::AbstractSubstitutionCount	protected
setSubstitutionModel(const SubstitutionModel *model)	bpp::OneJumpSubstitutionCount	inlinevirtual
setSubstitutionRegister(SubstitutionRegister *reg)	bpp::OneJumpSubstitutionCount	inlinevirtual
SubstitutionCount()	bpp::SubstitutionCount	inline
substitutionRegisterHasChanged()	bpp::OneJumpSubstitutionCount	inlineprivatevirtual
tmp_	bpp::OneJumpSubstitutionCount	mutableprivate
~AbstractSubstitutionCount()	bpp::AbstractSubstitutionCount	inline
~OneJumpSubstitutionCount()	bpp::OneJumpSubstitutionCount	inlinevirtual
~SubstitutionCount()	bpp::SubstitutionCount	inlinevirtual