bpp::ProbabilisticSubstitutionMapping Member List

This is the complete list of members for bpp::ProbabilisticSubstitutionMapping, including all inherited members.

AbstractMapping(const Tree &tree)	bpp::AbstractMapping	inline
AbstractMapping(const AbstractMapping &absm)	bpp::AbstractMapping	inline
AbstractSubstitutionMapping(const Tree &tree)	bpp::AbstractSubstitutionMapping	inline
AbstractSubstitutionMapping(const AbstractSubstitutionMapping &absm)	bpp::AbstractSubstitutionMapping	inline
clone() const	bpp::ProbabilisticSubstitutionMapping	inlinevirtual
bpp::getBranchLengths() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getBranchLengths() const	bpp::AbstractMapping	inlinevirtual
getNode(size_t nodeIndex) const	bpp::AbstractMapping	inlinevirtual
bpp::getNodeIndex(int nodeId) const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getNodeIndex(int nodeId) const	bpp::AbstractMapping	inlinevirtual
bpp::getNumberOfBranches() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getNumberOfBranches() const	bpp::AbstractMapping	inlinevirtual
bpp::getNumberOfSites() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getNumberOfSites() const	bpp::AbstractMapping	inlinevirtual
getNumberOfSubstitutions(int nodeId, size_t siteIndex, size_t type) const	bpp::ProbabilisticSubstitutionMapping	inlinevirtual
getNumberOfSubstitutions(int nodeId, size_t siteIndex) const	bpp::ProbabilisticSubstitutionMapping	inlinevirtual
getNumberOfSubstitutionTypes() const	bpp::ProbabilisticSubstitutionMapping	inlinevirtual
bpp::getSitePosition(size_t index) const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getSitePosition(size_t index) const	bpp::AbstractMapping	inlinevirtual
bpp::getTree() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::getTree() const	bpp::AbstractMapping	inlinevirtual
bpp::isEmpty() const =0	bpp::Mapping	pure virtual
bpp::AbstractMapping::isEmpty() const	bpp::AbstractMapping	inlinevirtual
Mapping()	bpp::Mapping	inline
mapping_	bpp::ProbabilisticSubstitutionMapping	private
operator()(size_t nodeIndex, size_t siteIndex, size_t type)	bpp::ProbabilisticSubstitutionMapping	inlinevirtual
operator()(size_t nodeIndex, size_t siteIndex, size_t type) const	bpp::ProbabilisticSubstitutionMapping	inlinevirtual
operator=(const ProbabilisticSubstitutionMapping &psm)	bpp::ProbabilisticSubstitutionMapping	inline
bpp::AbstractSubstitutionMapping::operator=(const AbstractSubstitutionMapping &absm)	bpp::AbstractSubstitutionMapping	inline
bpp::AbstractMapping::operator=(const AbstractMapping &absm)	bpp::AbstractMapping	inline
operator[](size_t siteIndex)	bpp::ProbabilisticSubstitutionMapping	inline
operator[](size_t siteIndex) const	bpp::ProbabilisticSubstitutionMapping	inline
ProbabilisticSubstitutionMapping(const Tree &tree, const SubstitutionCount *sc, size_t numberOfSites)	bpp::ProbabilisticSubstitutionMapping	inline
ProbabilisticSubstitutionMapping(const Tree &tree)	bpp::ProbabilisticSubstitutionMapping	inline
ProbabilisticSubstitutionMapping(const ProbabilisticSubstitutionMapping &psm)	bpp::ProbabilisticSubstitutionMapping	inline
setNumberOfSites(size_t numberOfSites)	bpp::ProbabilisticSubstitutionMapping	virtual
bpp::setSitePosition(size_t index, int position)=0	bpp::Mapping	pure virtual
bpp::AbstractMapping::setSitePosition(size_t index, int position)	bpp::AbstractMapping	inlinevirtual
setTree(const Tree &tree)	bpp::ProbabilisticSubstitutionMapping	virtual
substitutionCount_	bpp::ProbabilisticSubstitutionMapping	private
SubstitutionMapping()	bpp::SubstitutionMapping	inline
~AbstractMapping()	bpp::AbstractMapping	inlinevirtual
~AbstractSubstitutionMapping()	bpp::AbstractSubstitutionMapping	inlinevirtual
~Mapping()	bpp::Mapping	inlinevirtual
~ProbabilisticSubstitutionMapping()	bpp::ProbabilisticSubstitutionMapping	inlinevirtual
~SubstitutionMapping()	bpp::SubstitutionMapping	inlinevirtual