bpp::WordFromUniqueFrequenciesSet Member List

This is the complete list of members for bpp::WordFromUniqueFrequenciesSet, including all inherited members.

AbstractFrequenciesSet(StateMap *stateMap, const std::string &prefix, const std::string &name)	bpp::AbstractFrequenciesSet	inline
AbstractFrequenciesSet(const AbstractFrequenciesSet &af)	bpp::AbstractFrequenciesSet	inline
AbstractWordFrequenciesSet(StateMap *stateMap, const std::string &prefix="", const std::string &name="")	bpp::AbstractWordFrequenciesSet
AbstractWordFrequenciesSet(const AbstractWordFrequenciesSet &af)	bpp::AbstractWordFrequenciesSet	inline
clone() const	bpp::WordFromUniqueFrequenciesSet	inlinevirtual
fireParameterChanged(const ParameterList &pl)	bpp::WordFromUniqueFrequenciesSet	virtual
FREQUENCE_CONSTRAINT_MILLI	bpp::FrequenciesSet	static
FREQUENCE_CONSTRAINT_SMALL	bpp::FrequenciesSet	static
getAlphabet() const	bpp::AbstractWordFrequenciesSet	inlinevirtual
bpp::getAlphabetStatesFrequencies() const =0	bpp::FrequenciesSet	pure virtual
bpp::AbstractFrequenciesSet::getAlphabetStatesFrequencies() const	bpp::AbstractFrequenciesSet	virtual
getDescription() const	bpp::WordFromUniqueFrequenciesSet
getFreq_(size_t i)	bpp::AbstractFrequenciesSet	inlineprotected
getFreq_(size_t i) const	bpp::AbstractFrequenciesSet	inlineprotected
bpp::getFrequencies() const =0	bpp::FrequenciesSet	pure virtual
bpp::AbstractFrequenciesSet::getFrequencies() const	bpp::AbstractFrequenciesSet	inlinevirtual
getFrequencies_()	bpp::AbstractFrequenciesSet	inlineprotected
getFrequenciesSetForLetter(size_t i) const	bpp::WordFromUniqueFrequenciesSet	inlinevirtual
getLength() const	bpp::WordFromUniqueFrequenciesSet	inlinevirtual
bpp::getName() const =0	bpp::FrequenciesSet	pure virtual
bpp::AbstractFrequenciesSet::getName() const	bpp::AbstractFrequenciesSet	inlinevirtual
bpp::getNumberOfFrequencies() const =0	bpp::FrequenciesSet	pure virtual
bpp::AbstractFrequenciesSet::getNumberOfFrequencies() const	bpp::AbstractFrequenciesSet	inlinevirtual
getSizeFromVector(const std::vector< FrequenciesSet *> &freqVector)	bpp::AbstractWordFrequenciesSet	protectedvirtual
bpp::getStateMap() const =0	bpp::FrequenciesSet	pure virtual
bpp::AbstractFrequenciesSet::getStateMap() const	bpp::AbstractFrequenciesSet	inlinevirtual
length_	bpp::WordFromUniqueFrequenciesSet	protected
NestedPrefix_	bpp::WordFromUniqueFrequenciesSet	protected
normalize()	bpp::AbstractFrequenciesSet	inline
operator=(const WordFromUniqueFrequenciesSet &iwfs)	bpp::WordFromUniqueFrequenciesSet
bpp::AbstractWordFrequenciesSet::operator=(const AbstractWordFrequenciesSet &af)	bpp::AbstractWordFrequenciesSet	inline
bpp::AbstractFrequenciesSet::operator=(const AbstractFrequenciesSet &af)	bpp::AbstractFrequenciesSet	inline
pFreq_	bpp::WordFromUniqueFrequenciesSet	protected
setFrequencies(const std::vector< double > &frequencies)	bpp::WordFromUniqueFrequenciesSet	virtual
setFrequencies_(const std::vector< double > &frequencies)	bpp::AbstractFrequenciesSet	inlineprotected
bpp::setFrequenciesFromAlphabetStatesFrequencies(const std::map< int, double > &frequencies)=0	bpp::FrequenciesSet	pure virtual
bpp::AbstractFrequenciesSet::setFrequenciesFromAlphabetStatesFrequencies(const std::map< int, double > &frequencies)	bpp::AbstractFrequenciesSet	virtual
setNamespace(const std::string &prefix)	bpp::WordFromUniqueFrequenciesSet
updateFrequencies()	bpp::WordFromUniqueFrequenciesSet	virtual
WordFromUniqueFrequenciesSet(const WordAlphabet *pWA, FrequenciesSet *pabsfreq, const std::string &prefix="", const std::string &name="WordFromUnique")	bpp::WordFromUniqueFrequenciesSet
WordFromUniqueFrequenciesSet(const WordFromUniqueFrequenciesSet &iwfs)	bpp::WordFromUniqueFrequenciesSet
~AbstractWordFrequenciesSet()	bpp::AbstractWordFrequenciesSet	virtual
~WordFromUniqueFrequenciesSet()	bpp::WordFromUniqueFrequenciesSet