bpp::Individual Member List

This is the complete list of members for bpp::Individual, including all inherited members.

addSequence(size_t sequence_key, const Sequence &sequence)	bpp::Individual
coord_	bpp::Individual	protected
countHeterozygousLoci() const	bpp::Individual
countHomozygousLoci() const	bpp::Individual
countNonMissingLoci() const	bpp::Individual
date_	bpp::Individual	protected
deleteGenotype()	bpp::Individual
deleteSequenceAtPosition(size_t sequence_position)	bpp::Individual
deleteSequenceByName(const std::string &sequence_name)	bpp::Individual
genotype_	bpp::Individual	protected
getCoord() const	bpp::Individual
getDate() const	bpp::Individual
getGenotype() const	bpp::Individual
getId() const	bpp::Individual	inline
getLocality() const	bpp::Individual
getMonolocusGenotype(size_t locus_position)	bpp::Individual
getNumberOfSequences() const	bpp::Individual
getSequenceAlphabet() const	bpp::Individual
getSequenceAtPosition(const size_t sequence_position) const	bpp::Individual
getSequenceByName(const std::string &sequence_name) const	bpp::Individual
getSequencePosition(const std::string &sequence_name) const	bpp::Individual
getSequences() const	bpp::Individual
getSequencesNames() const	bpp::Individual
getSequencesPositions() const	bpp::Individual
getSex() const	bpp::Individual	inline
getX() const	bpp::Individual
getY() const	bpp::Individual
hasCoord() const	bpp::Individual
hasDate() const	bpp::Individual
hasGenotype() const	bpp::Individual
hasLocality() const	bpp::Individual
hasSequenceAtPosition(size_t position) const	bpp::Individual
hasSequences() const	bpp::Individual
id_	bpp::Individual	protected
Individual()	bpp::Individual
Individual(const std::string &id)	bpp::Individual
Individual(const std::string &id, const Date &date, const Point2D< double > &coord, Locality< double > *locality, const unsigned short sex)	bpp::Individual
Individual(const Individual &ind)	bpp::Individual
initGenotype(size_t loci_number)	bpp::Individual
locality_	bpp::Individual	protected
operator=(const Individual &ind)	bpp::Individual
sequences_	bpp::Individual	protected
setCoord(const Point2D< double > &coord)	bpp::Individual
setCoord(const double x, const double y)	bpp::Individual
setDate(const Date &date)	bpp::Individual
setGenotype(const MultilocusGenotype &genotype)	bpp::Individual
setId(const std::string &id)	bpp::Individual
setLocality(const Locality< double > *locality)	bpp::Individual
setMonolocusGenotype(size_t locus_position, const MonolocusGenotype &monogen)	bpp::Individual
setMonolocusGenotypeByAlleleId(size_t locus_position, const std::vector< std::string > allele_id, const LocusInfo &locus_info)	bpp::Individual
setMonolocusGenotypeByAlleleKey(size_t locus_position, const std::vector< size_t > allele_keys)	bpp::Individual
setSequences(const MapSequenceContainer &msc)	bpp::Individual
setSex(const unsigned short sex)	bpp::Individual
setX(const double x)	bpp::Individual
setY(const double y)	bpp::Individual
sex_	bpp::Individual	protected
~Individual()	bpp::Individual	virtual