bpp::PolymorphismSequenceContainer Member List

This is the complete list of members for bpp::PolymorphismSequenceContainer, including all inherited members.

addSequence(const Sequence &sequence, bool checkName=true)	bpp::PolymorphismSequenceContainer	inline
addSequence(const Sequence &sequence, size_t sequenceIndex, bool checkName=true)	bpp::PolymorphismSequenceContainer	inline
addSequenceWithFrequency(const Sequence &sequence, unsigned int frequency, bool checkName=true)	bpp::PolymorphismSequenceContainer
addSequenceWithFrequency(const Sequence &sequence, size_t sequenceIndex, unsigned int frequency, bool checkName=true)	bpp::PolymorphismSequenceContainer
clear()	bpp::PolymorphismSequenceContainer
clone() const	bpp::PolymorphismSequenceContainer	inline
count_	bpp::PolymorphismSequenceContainer	private
decrementSequenceCount(size_t index)	bpp::PolymorphismSequenceContainer
decrementSequenceCount(const std::string &name)	bpp::PolymorphismSequenceContainer
deleteSequence(size_t index)	bpp::PolymorphismSequenceContainer
deleteSequence(const std::string &name)	bpp::PolymorphismSequenceContainer
getAllGroupsIds() const	bpp::PolymorphismSequenceContainer
getGroupId(size_t index) const	bpp::PolymorphismSequenceContainer
getGroupId(const std::string &name) const	bpp::PolymorphismSequenceContainer
getNumberOfGroups() const	bpp::PolymorphismSequenceContainer
getSequenceCount(size_t index) const	bpp::PolymorphismSequenceContainer
getSequenceCount(const std::string &name) const	bpp::PolymorphismSequenceContainer
group_	bpp::PolymorphismSequenceContainer	private
incrementSequenceCount(size_t index)	bpp::PolymorphismSequenceContainer
incrementSequenceCount(const std::string &name)	bpp::PolymorphismSequenceContainer
ingroup_	bpp::PolymorphismSequenceContainer	private
isIngroupMember(size_t index) const	bpp::PolymorphismSequenceContainer
isIngroupMember(const std::string &name) const	bpp::PolymorphismSequenceContainer
operator=(const PolymorphismSequenceContainer &psc)	bpp::PolymorphismSequenceContainer
PolymorphismSequenceContainer(const Alphabet *alpha)	bpp::PolymorphismSequenceContainer
PolymorphismSequenceContainer(size_t size, const Alphabet *alpha)	bpp::PolymorphismSequenceContainer
PolymorphismSequenceContainer(const OrderedSequenceContainer &sc)	bpp::PolymorphismSequenceContainer
PolymorphismSequenceContainer(const SiteContainer &sc)	bpp::PolymorphismSequenceContainer
PolymorphismSequenceContainer(const PolymorphismSequenceContainer &psc)	bpp::PolymorphismSequenceContainer
removeSequence(size_t index)	bpp::PolymorphismSequenceContainer
removeSequence(const std::string &name)	bpp::PolymorphismSequenceContainer
setAsIngroupMember(size_t index)	bpp::PolymorphismSequenceContainer
setAsIngroupMember(const std::string &name)	bpp::PolymorphismSequenceContainer
setAsOutgroupMember(size_t index)	bpp::PolymorphismSequenceContainer
setAsOutgroupMember(const std::string &name)	bpp::PolymorphismSequenceContainer
setGroupId(size_t index, size_t group_id)	bpp::PolymorphismSequenceContainer
setGroupId(const std::string &name, size_t group_id)	bpp::PolymorphismSequenceContainer
setSequenceCount(size_t index, unsigned int count)	bpp::PolymorphismSequenceContainer
setSequenceCount(const std::string &name, unsigned int count)	bpp::PolymorphismSequenceContainer
~PolymorphismSequenceContainer()	bpp::PolymorphismSequenceContainer	virtual