bpp::MafSequence Member List

This is the complete list of members for bpp::MafSequence, including all inherited members.

afterSequenceChanged(const SymbolListEditionEvent &event)	bpp::MafSequence	inlineprivate
afterSequenceDeleted(const SymbolListDeletionEvent &event)	bpp::MafSequence	inlineprivate
afterSequenceInserted(const SymbolListInsertionEvent &event)	bpp::MafSequence	inlineprivate
afterSequenceSubstituted(const SymbolListSubstitutionEvent &event)	bpp::MafSequence	inlineprivate
beforeSequenceChanged(const SymbolListEditionEvent &event)	bpp::MafSequence	inlineprivate
beforeSequenceDeleted(const SymbolListDeletionEvent &event)	bpp::MafSequence	inlineprivate
beforeSequenceInserted(const SymbolListInsertionEvent &event)	bpp::MafSequence	inlineprivate
beforeSequenceSubstituted(const SymbolListSubstitutionEvent &event)	bpp::MafSequence	inlineprivate
begin_	bpp::MafSequence	private
chromosome_	bpp::MafSequence	private
clone() const	bpp::MafSequence	inline
getChromosome() const	bpp::MafSequence	inline
getDescription() const	bpp::MafSequence	inline
getGenomicSize() const	bpp::MafSequence	inline
getRange(bool origin=true) const	bpp::MafSequence	inline
getSpecies() const	bpp::MafSequence	inline
getSrcSize() const	bpp::MafSequence	inline
getStrand() const	bpp::MafSequence	inline
hasCoordinates() const	bpp::MafSequence	inline
hasCoordinates_	bpp::MafSequence	private
MafSequence()	bpp::MafSequence	inline
MafSequence(const std::string &name, const std::string &sequence, bool parseName=true)	bpp::MafSequence	inline
MafSequence(const std::string &name, const std::string &sequence, size_t begin, char strand, size_t srcSize, bool parseName=true)	bpp::MafSequence	inline
removeCoordinates()	bpp::MafSequence	inline
setChromosome(const std::string &chr)	bpp::MafSequence	inline
setName(const std::string &name)	bpp::MafSequence	inline
setSpecies(const std::string &species)	bpp::MafSequence	inline
setSrcSize(size_t srcSize)	bpp::MafSequence	inline
setStart(size_t begin)	bpp::MafSequence	inline
setStrand(char s)	bpp::MafSequence	inline
size_	bpp::MafSequence	private
species_	bpp::MafSequence	private
splitNameIntoSpeciesAndChromosome(const std::string &name, std::string &species, std::string &chr)	bpp::MafSequence	inlinestatic
srcSize_	bpp::MafSequence	private
start() const	bpp::MafSequence	inline
stop() const	bpp::MafSequence	inline
strand_	bpp::MafSequence	private
subSequence(size_t startAt, size_t length) const	bpp::MafSequence
~MafSequence()	bpp::MafSequence	inline