bpp::AbstractSequenceContainer Member List

This is the complete list of members for bpp::AbstractSequenceContainer, including all inherited members.

AbstractSequenceContainer(const Alphabet *alpha)	bpp::AbstractSequenceContainer	inline
AbstractSequenceContainer(const AbstractSequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
AbstractSequenceContainer(const SequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
addSequence(const Sequence &sequence, bool checkName)=0	bpp::SequenceContainer	pure virtual
alphabet_	bpp::AbstractSequenceContainer	private
clear()=0	bpp::SequenceContainer	pure virtual
comments_	bpp::AbstractSequenceContainer	private
createEmptyContainer() const =0	bpp::SequenceContainer	pure virtual
deleteGeneralComments()	bpp::AbstractSequenceContainer	inlinevirtual
deleteSequence(size_t sequenceIndex)=0	bpp::OrderedSequenceContainer	pure virtual
deleteSequence(const std::string &name)=0	bpp::OrderedSequenceContainer	pure virtual
getAlphabet() const	bpp::AbstractSequenceContainer	inlinevirtual
getComments(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
getComments(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getContent(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
getContent(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getGeneralComments() const	bpp::AbstractSequenceContainer	inlinevirtual
getName(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getNumberOfSequences() const =0	bpp::OrderedSequenceContainer	pure virtual
getSequence(size_t sequenceIndex) const =0	bpp::OrderedSequenceContainer	pure virtual
getSequence(const std::string &name) const =0	bpp::OrderedSequenceContainer	pure virtual
getSequencePosition(const std::string &name) const =0	bpp::OrderedSequenceContainer	pure virtual
getSequencesNames() const =0	bpp::OrderedSequenceContainer	pure virtual
hasSequence(const std::string &name) const =0	bpp::SequenceContainer	pure virtual
operator()(size_t sequenceIndex, size_t elementIndex)=0	bpp::OrderedSequenceContainer	pure virtual
operator()(size_t sequenceIndex, size_t elementIndex) const =0	bpp::OrderedSequenceContainer	pure virtual
bpp::SequenceContainer::operator()(const std::string &sequenceName, size_t elementIndex)=0	bpp::SequenceContainer	pure virtual
bpp::SequenceContainer::operator()(const std::string &sequenceName, size_t elementIndex) const =0	bpp::SequenceContainer	pure virtual
operator=(const AbstractSequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
operator=(const SequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
OrderedSequenceContainer()	bpp::OrderedSequenceContainer	inline
removeSequence(size_t sequenceIndex)=0	bpp::OrderedSequenceContainer	pure virtual
removeSequence(const std::string &name)=0	bpp::OrderedSequenceContainer	pure virtual
SequenceContainer()	bpp::SequenceContainer	inline
setComments(const std::string &name, const Comments &comments)	bpp::AbstractSequenceContainer	virtual
setComments(size_t sequenceIndex, const Comments &comments)=0	bpp::AbstractSequenceContainer	pure virtual
setGeneralComments(const Comments &comments)	bpp::AbstractSequenceContainer	inlinevirtual
setSequence(size_t sequenceIndex, const Sequence &sequence, bool checkName)=0	bpp::OrderedSequenceContainer	pure virtual
setSequence(const std::string &name, const Sequence &sequence, bool checkName)=0	bpp::OrderedSequenceContainer	pure virtual
setSequencesNames(const std::vector< std::string > &names, bool checkNames)=0	bpp::OrderedSequenceContainer	pure virtual
toString(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
toString(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
valueAt(const std::string &sequenceName, size_t elementIndex)=0	bpp::OrderedSequenceContainer	pure virtual
valueAt(const std::string &sequenceName, size_t elementIndex) const =0	bpp::OrderedSequenceContainer	pure virtual
valueAt(size_t sequenceIndex, size_t elementIndex)=0	bpp::OrderedSequenceContainer	pure virtual
valueAt(size_t sequenceIndex, size_t elementIndex) const =0	bpp::OrderedSequenceContainer	pure virtual
~AbstractSequenceContainer()	bpp::AbstractSequenceContainer	inlinevirtual
~OrderedSequenceContainer()	bpp::OrderedSequenceContainer	inlinevirtual
~SequenceContainer()	bpp::SequenceContainer	inlinevirtual