- Generated on Sat May 23 2020 12:00:22 for bpp-seq by
1.8.14
|
bpp-seq
2.2.0
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This is the complete list of members for bpp::Alphabet, including all inherited members.
| Alphabet() | bpp::Alphabet | inline |
| charToInt(const std::string &state) const =0 | bpp::Alphabet | pure virtual |
| clone() const =0 | bpp::Alphabet | pure virtual |
| equals(const Alphabet &alphabet) const =0 | bpp::Alphabet | pure virtual |
| getAlias(int state) const =0 | bpp::Alphabet | pure virtual |
| getAlias(const std::string &state) const =0 | bpp::Alphabet | pure virtual |
| getAlphabetType() const =0 | bpp::Alphabet | pure virtual |
| getCharCodeAt(size_t stateIndex) const =0 | bpp::Alphabet | pure virtual |
| getGapCharacterCode() const =0 | bpp::Alphabet | pure virtual |
| getGeneric(const std::vector< int > &states) const =0 | bpp::Alphabet | pure virtual |
| getGeneric(const std::vector< std::string > &states) const =0 | bpp::Alphabet | pure virtual |
| getIntCodeAt(size_t stateIndex) const =0 | bpp::Alphabet | pure virtual |
| getName(int state) const =0 | bpp::Alphabet | pure virtual |
| getName(const std::string &state) const =0 | bpp::Alphabet | pure virtual |
| getNumberOfChars() const =0 | bpp::Alphabet | pure virtual |
| getNumberOfStates() const =0 | bpp::Alphabet | pure virtual |
| getNumberOfTypes() const =0 | bpp::Alphabet | pure virtual |
| getSize() const =0 | bpp::Alphabet | pure virtual |
| getState(int state) const =0 | bpp::Alphabet | pure virtual |
| getState(const std::string &state) const =0 | bpp::Alphabet | pure virtual |
| getStateAt(size_t stateIndex) const =0 | bpp::Alphabet | pure virtual |
| getStateCodingSize() const =0 | bpp::Alphabet | pure virtual |
| getStateIndex(int state) const =0 | bpp::Alphabet | pure virtual |
| getStateIndex(const std::string &state) const =0 | bpp::Alphabet | pure virtual |
| getSupportedChars() const =0 | bpp::Alphabet | pure virtual |
| getSupportedInts() const =0 | bpp::Alphabet | pure virtual |
| getUnknownCharacterCode() const =0 | bpp::Alphabet | pure virtual |
| intToChar(int state) const =0 | bpp::Alphabet | pure virtual |
| isCharInAlphabet(const std::string &state) const =0 | bpp::Alphabet | pure virtual |
| isGap(int state) const =0 | bpp::Alphabet | pure virtual |
| isGap(const std::string &state) const =0 | bpp::Alphabet | pure virtual |
| isIntInAlphabet(int state) const =0 | bpp::Alphabet | pure virtual |
| isUnresolved(int state) const =0 | bpp::Alphabet | pure virtual |
| isUnresolved(const std::string &state) const =0 | bpp::Alphabet | pure virtual |
| ~Alphabet() | bpp::Alphabet | inlinevirtual |
1.8.14