bpp::BasicSequence Member List

This is the complete list of members for bpp::BasicSequence, including all inherited members.

bpp::addElement(const std::string &c)=0	bpp::SymbolList	pure virtual
bpp::addElement(size_t pos, const std::string &c)=0	bpp::SymbolList	pure virtual
bpp::addElement(int v)=0	bpp::SymbolList	pure virtual
bpp::addElement(size_t pos, int v)=0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::addElement(const std::string &c)	bpp::BasicSymbolList	virtual
bpp::BasicSymbolList::addElement(size_t pos, const std::string &c)	bpp::BasicSymbolList	virtual
bpp::BasicSymbolList::addElement(int v)	bpp::BasicSymbolList	virtual
bpp::BasicSymbolList::addElement(size_t pos, int v)	bpp::BasicSymbolList	virtual
append(const std::vector< int > &content)	bpp::BasicSequence	virtual
append(const std::vector< std::string > &content)	bpp::BasicSequence	virtual
append(const std::string &content)	bpp::BasicSequence	virtual
BasicSequence(const Alphabet *alpha)	bpp::BasicSequence
BasicSequence(const std::string &name, const std::string &sequence, const Alphabet *alpha)	bpp::BasicSequence
BasicSequence(const std::string &name, const std::string &sequence, const Comments &comments, const Alphabet *alpha)	bpp::BasicSequence
BasicSequence(const std::string &name, const std::vector< std::string > &sequence, const Alphabet *alpha)	bpp::BasicSequence
BasicSequence(const std::string &name, const std::vector< std::string > &sequence, const Comments &comments, const Alphabet *alpha)	bpp::BasicSequence
BasicSequence(const std::string &name, const std::vector< int > &sequence, const Alphabet *alpha)	bpp::BasicSequence
BasicSequence(const std::string &name, const std::vector< int > &sequence, const Comments &comments, const Alphabet *alpha)	bpp::BasicSequence
BasicSequence(const Sequence &s)	bpp::BasicSequence
BasicSequence(const BasicSequence &s)	bpp::BasicSequence
BasicSymbolList(const Alphabet *alpha)	bpp::BasicSymbolList	inline
BasicSymbolList(const std::vector< std::string > &list, const Alphabet *alpha)	bpp::BasicSymbolList
BasicSymbolList(const std::vector< int > &list, const Alphabet *alpha)	bpp::BasicSymbolList
BasicSymbolList(const SymbolList &list)	bpp::BasicSymbolList
BasicSymbolList(const BasicSymbolList &list)	bpp::BasicSymbolList
clone() const	bpp::BasicSequence	inlinevirtual
comments_	bpp::BasicSequence	private
content_	bpp::BasicSymbolList	protected
bpp::deleteElement(size_t pos)=0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::deleteElement(size_t pos)	bpp::BasicSymbolList	virtual
bpp::deleteElements(size_t pos, size_t len)=0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::deleteElements(size_t pos, size_t len)	bpp::BasicSymbolList	virtual
bpp::getAlphabet() const =0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::getAlphabet() const	bpp::BasicSymbolList	inlinevirtual
bpp::getChar(size_t pos) const =0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::getChar(size_t pos) const	bpp::BasicSymbolList	virtual
getComments() const	bpp::BasicSequence	inlinevirtual
bpp::getContent() const =0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::getContent() const	bpp::BasicSymbolList	inlinevirtual
getName() const	bpp::BasicSequence	inlinevirtual
bpp::getValue(size_t pos) const =0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::getValue(size_t pos) const	bpp::BasicSymbolList	virtual
name_	bpp::BasicSequence	private
operator=(const Sequence &s)	bpp::BasicSequence
operator=(const BasicSequence &s)	bpp::BasicSequence
bpp::BasicSymbolList::operator=(const SymbolList &list)	bpp::BasicSymbolList
bpp::BasicSymbolList::operator=(const BasicSymbolList &list)	bpp::BasicSymbolList
bpp::operator[](size_t i) const =0	bpp::SymbolList	pure virtual
bpp::operator[](size_t i)=0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::operator[](size_t i) const	bpp::BasicSymbolList	inlinevirtual
bpp::BasicSymbolList::operator[](size_t i)	bpp::BasicSymbolList	inlinevirtual
setComments(const Comments &comments)	bpp::BasicSequence	inlinevirtual
setContent(const std::string &sequence)	bpp::BasicSequence	virtual
setContent(const std::vector< int > &list)	bpp::BasicSequence	inlinevirtual
setContent(const std::vector< std::string > &list)	bpp::BasicSequence	inlinevirtual
bpp::setElement(size_t pos, const std::string &c)=0	bpp::SymbolList	pure virtual
bpp::setElement(size_t pos, int v)=0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::setElement(size_t pos, const std::string &c)	bpp::BasicSymbolList	virtual
bpp::BasicSymbolList::setElement(size_t pos, int v)	bpp::BasicSymbolList	virtual
setName(const std::string &name)	bpp::BasicSequence	inlinevirtual
setToSizeL(size_t newSize)	bpp::BasicSequence	virtual
setToSizeR(size_t newSize)	bpp::BasicSequence	virtual
bpp::shuffle()=0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::shuffle()	bpp::BasicSymbolList	inlinevirtual
bpp::size() const =0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::size() const	bpp::BasicSymbolList	inlinevirtual
bpp::toString() const =0	bpp::SymbolList	pure virtual
bpp::BasicSymbolList::toString() const	bpp::BasicSymbolList	virtual
~BasicSequence()	bpp::BasicSequence	inlinevirtual
~BasicSymbolList()	bpp::BasicSymbolList	inlinevirtual
~Sequence()	bpp::Sequence	inlinevirtual
~SymbolList()	bpp::SymbolList	inlinevirtual