bpp-seq
2.2.0
bpp::GeneticCode Member List
This is the complete list of members for
bpp::GeneticCode
, including all inherited members.
AbstractTransliterator
()
bpp::AbstractTransliterator
inline
areSynonymous
(int i, int j) const
bpp::GeneticCode
inline
areSynonymous
(const std::string &i, const std::string &j) const
bpp::GeneticCode
inline
clone
() const =0
bpp::GeneticCode
pure virtual
codonAlphabet_
bpp::GeneticCode
protected
GeneticCode
(const NucleicAlphabet *alphabet)
bpp::GeneticCode
inline
getCodingSequence
(const Sequence &sequence, bool lookForInitCodon=false, bool includeInitCodon=false) const
bpp::GeneticCode
getNumberOfStopCodons
() const =0
bpp::GeneticCode
pure virtual
getSourceAlphabet
() const
bpp::GeneticCode
inline
virtual
getStopCodonsAsChar
() const =0
bpp::GeneticCode
pure virtual
getStopCodonsAsInt
() const =0
bpp::GeneticCode
pure virtual
getSynonymous
(int aminoacid) const
bpp::GeneticCode
getSynonymous
(const std::string &aminoacid) const
bpp::GeneticCode
getTargetAlphabet
() const
bpp::GeneticCode
inline
virtual
isAltStart
(int state) const =0
bpp::GeneticCode
pure virtual
isAltStart
(const std::string &state) const =0
bpp::GeneticCode
pure virtual
isFourFoldDegenerated
(int codon) const
bpp::GeneticCode
isStart
(int state) const
bpp::GeneticCode
inline
virtual
isStart
(const std::string &state) const
bpp::GeneticCode
inline
virtual
isStop
(int state) const =0
bpp::GeneticCode
pure virtual
isStop
(const std::string &state) const =0
bpp::GeneticCode
pure virtual
proteicAlphabet_
bpp::GeneticCode
protected
tlnTable_
bpp::GeneticCode
protected
translate
(int state) const
bpp::GeneticCode
virtual
translate
(const std::string &state) const
bpp::GeneticCode
virtual
translate
(const Sequence &sequence) const
bpp::GeneticCode
inline
virtual
Transliterator
()
bpp::Transliterator
inline
~AbstractTransliterator
()
bpp::AbstractTransliterator
inline
virtual
~GeneticCode
()
bpp::GeneticCode
inline
virtual
~Transliterator
()
bpp::Transliterator
inline
virtual
Generated on Sat May 23 2020 12:00:22 for bpp-seq by
1.8.14