bpp-seq  2.2.0
bpp::GeneticCode Member List

This is the complete list of members for bpp::GeneticCode, including all inherited members.

AbstractTransliterator()bpp::AbstractTransliteratorinline
areSynonymous(int i, int j) constbpp::GeneticCodeinline
areSynonymous(const std::string &i, const std::string &j) constbpp::GeneticCodeinline
clone() const =0bpp::GeneticCodepure virtual
codonAlphabet_bpp::GeneticCodeprotected
GeneticCode(const NucleicAlphabet *alphabet)bpp::GeneticCodeinline
getCodingSequence(const Sequence &sequence, bool lookForInitCodon=false, bool includeInitCodon=false) constbpp::GeneticCode
getNumberOfStopCodons() const =0bpp::GeneticCodepure virtual
getSourceAlphabet() constbpp::GeneticCodeinlinevirtual
getStopCodonsAsChar() const =0bpp::GeneticCodepure virtual
getStopCodonsAsInt() const =0bpp::GeneticCodepure virtual
getSynonymous(int aminoacid) constbpp::GeneticCode
getSynonymous(const std::string &aminoacid) constbpp::GeneticCode
getTargetAlphabet() constbpp::GeneticCodeinlinevirtual
isAltStart(int state) const =0bpp::GeneticCodepure virtual
isAltStart(const std::string &state) const =0bpp::GeneticCodepure virtual
isFourFoldDegenerated(int codon) constbpp::GeneticCode
isStart(int state) constbpp::GeneticCodeinlinevirtual
isStart(const std::string &state) constbpp::GeneticCodeinlinevirtual
isStop(int state) const =0bpp::GeneticCodepure virtual
isStop(const std::string &state) const =0bpp::GeneticCodepure virtual
proteicAlphabet_bpp::GeneticCodeprotected
tlnTable_bpp::GeneticCodeprotected
translate(int state) constbpp::GeneticCodevirtual
translate(const std::string &state) constbpp::GeneticCodevirtual
translate(const Sequence &sequence) constbpp::GeneticCodeinlinevirtual
Transliterator()bpp::Transliteratorinline
~AbstractTransliterator()bpp::AbstractTransliteratorinlinevirtual
~GeneticCode()bpp::GeneticCodeinlinevirtual
~Transliterator()bpp::Transliteratorinlinevirtual