bpp::MapSequenceContainer Member List

This is the complete list of members for bpp::MapSequenceContainer, including all inherited members.

AbstractSequenceContainer(const Alphabet *alpha)	bpp::AbstractSequenceContainer	inline
AbstractSequenceContainer(const AbstractSequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
AbstractSequenceContainer(const SequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
addSequence(const std::string &key, const Sequence &sequence, bool checkNames=true)	bpp::MapSequenceContainer
addSequence(const Sequence &sequence, bool checkNames=true)	bpp::MapSequenceContainer	inlinevirtual
clear()	bpp::MapSequenceContainer	virtual
clone() const	bpp::MapSequenceContainer	inline
createEmptyContainer() const	bpp::MapSequenceContainer	virtual
deleteGeneralComments()	bpp::AbstractSequenceContainer	inlinevirtual
deleteSequence(const std::string &name)	bpp::MapSequenceContainer	virtual
deleteSequence(size_t sequenceIndex)	bpp::MapSequenceContainer	virtual
deleteSequenceByKey(const std::string &key)	bpp::MapSequenceContainer
getAlphabet() const	bpp::AbstractSequenceContainer	inlinevirtual
getComments(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
getComments(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getContent(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
getContent(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getGeneralComments() const	bpp::AbstractSequenceContainer	inlinevirtual
getKey(size_t pos) const	bpp::MapSequenceContainer
getKey(const std::string &name) const	bpp::MapSequenceContainer
getKeys() const	bpp::MapSequenceContainer
getName(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getNumberOfSequences() const	bpp::MapSequenceContainer	inlinevirtual
getSequence(const std::string &name) const	bpp::MapSequenceContainer	virtual
getSequence(size_t sequenceIndex) const	bpp::MapSequenceContainer	virtual
getSequence_(size_t i)	bpp::MapSequenceContainer
getSequence_(const std::string &name)	bpp::MapSequenceContainer
getSequenceByKey(const std::string &key) const	bpp::MapSequenceContainer
getSequencePosition(const std::string &name) const	bpp::MapSequenceContainer	virtual
getSequencesNames() const	bpp::MapSequenceContainer	virtual
hasSequence(const std::string &name) const	bpp::MapSequenceContainer	virtual
MapSequenceContainer(const std::map< std::string, Sequence *> &ms, const Alphabet *alpha)	bpp::MapSequenceContainer
MapSequenceContainer(const Alphabet *alpha)	bpp::MapSequenceContainer	inline
MapSequenceContainer(const MapSequenceContainer &msc)	bpp::MapSequenceContainer
operator()(const std::string &sequenceName, size_t elementIndex)	bpp::MapSequenceContainer	inlinevirtual
operator()(const std::string &sequenceName, size_t elementIndex) const	bpp::MapSequenceContainer	inlinevirtual
operator()(size_t sequenceIndex, size_t elementIndex)	bpp::MapSequenceContainer	inlinevirtual
operator()(size_t sequenceIndex, size_t elementIndex) const	bpp::MapSequenceContainer	inlinevirtual
operator=(const MapSequenceContainer &msc)	bpp::MapSequenceContainer
bpp::AbstractSequenceContainer::operator=(const AbstractSequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
bpp::AbstractSequenceContainer::operator=(const SequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
OrderedSequenceContainer()	bpp::OrderedSequenceContainer	inline
removeSequence(const std::string &name)	bpp::MapSequenceContainer	virtual
removeSequence(size_t sequenceIndex)	bpp::MapSequenceContainer	virtual
removeSequenceByKey(const std::string &key)	bpp::MapSequenceContainer
SequenceContainer()	bpp::SequenceContainer	inline
sequences_	bpp::MapSequenceContainer	private
setComments(size_t sequenceIndex, const Comments &comments)	bpp::MapSequenceContainer	virtual
bpp::AbstractSequenceContainer::setComments(const std::string &name, const Comments &comments)	bpp::AbstractSequenceContainer	virtual
setGeneralComments(const Comments &comments)	bpp::AbstractSequenceContainer	inlinevirtual
setSequence(const std::string &name, const Sequence &sequence, bool checkName=true)	bpp::MapSequenceContainer	virtual
setSequence(size_t sequenceIndex, const Sequence &sequence, bool checkName=true)	bpp::MapSequenceContainer	virtual
setSequenceByKey(const std::string &key, const Sequence &sequence, bool checkNames=true)	bpp::MapSequenceContainer
setSequencesNames(const std::vector< std::string > &names, bool checkNames)	bpp::MapSequenceContainer	virtual
toString(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
toString(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
valueAt(const std::string &sequenceName, size_t elementIndex)	bpp::MapSequenceContainer	inlinevirtual
valueAt(const std::string &sequenceName, size_t elementIndex) const	bpp::MapSequenceContainer	inlinevirtual
valueAt(size_t sequenceIndex, size_t elementIndex)	bpp::MapSequenceContainer	inlinevirtual
valueAt(size_t sequenceIndex, size_t elementIndex) const	bpp::MapSequenceContainer	inlinevirtual
~AbstractSequenceContainer()	bpp::AbstractSequenceContainer	inlinevirtual
~MapSequenceContainer()	bpp::MapSequenceContainer	virtual
~OrderedSequenceContainer()	bpp::OrderedSequenceContainer	inlinevirtual
~SequenceContainer()	bpp::SequenceContainer	inlinevirtual