bpp-seq
2.2.0
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This is the complete list of members for bpp::NexusIOSequence, including all inherited members.
AbstractIAlignment() | bpp::AbstractIAlignment | inline |
appendAlignmentFromFile(const std::string &path, SiteContainer &sc) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
appendAlignmentFromStream(std::istream &input, SiteContainer &sc) const | bpp::NexusIOSequence | virtual |
charsByLine_ | bpp::NexusIOSequence | protected |
checkNames() const | bpp::NexusIOSequence | inline |
checkNames(bool yn) | bpp::NexusIOSequence | inline |
checkNames_ | bpp::NexusIOSequence | protected |
getDataType() const | bpp::IOSequence | inline |
getFormatDescription() const | bpp::NexusIOSequence | |
getFormatName() const | bpp::NexusIOSequence | |
IAlignment() | bpp::IAlignment | inline |
IOSequence() | bpp::IOSequence | inline |
ISequence() | bpp::ISequence | inline |
NexusIOSequence(unsigned int charsByLine=100, bool checkSequenceNames=true) | bpp::NexusIOSequence | inline |
readAlignment(std::istream &input, SiteContainer &sc) const | bpp::AbstractIAlignment | inlinevirtual |
readAlignment(const std::string &path, SiteContainer &sc) const | bpp::AbstractIAlignment | inlinevirtual |
readAlignment(const std::string &path, const Alphabet *alpha) const | bpp::AbstractIAlignment | inlinevirtual |
readAlignment(std::istream &input, const Alphabet *alpha) const | bpp::AbstractIAlignment | inlinevirtual |
readAlignmentFromFile(const std::string &path, const Alphabet *alpha) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
readAlignmentFromStream(std::istream &input, const Alphabet *alpha) const | bpp::AbstractIAlignment | inlineprotectedvirtual |
readSequences(std::istream &input, const Alphabet *alpha) const | bpp::NexusIOSequence | inlinevirtual |
readSequences(const std::string &path, const Alphabet *alpha) const | bpp::NexusIOSequence | inlinevirtual |
splitNameAndSequence_(const std::string &s) const | bpp::NexusIOSequence | private |
~AbstractIAlignment() | bpp::AbstractIAlignment | inlinevirtual |
~IAlignment() | bpp::IAlignment | inlinevirtual |
~IOSequence() | bpp::IOSequence | inlinevirtual |
~ISequence() | bpp::ISequence | inlinevirtual |
~NexusIOSequence() | bpp::NexusIOSequence | inlinevirtual |