bpp-seq  2.2.0
bpp::SequenceContainer Member List

This is the complete list of members for bpp::SequenceContainer, including all inherited members.

addSequence(const Sequence &sequence, bool checkName)=0bpp::SequenceContainerpure virtual
clear()=0bpp::SequenceContainerpure virtual
createEmptyContainer() const =0bpp::SequenceContainerpure virtual
deleteGeneralComments()=0bpp::SequenceContainerpure virtual
deleteSequence(const std::string &name)=0bpp::SequenceContainerpure virtual
getAlphabet() const =0bpp::SequenceContainerpure virtual
getComments(const std::string &name) const =0bpp::SequenceContainerpure virtual
getContent(const std::string &name) const =0bpp::SequenceContainerpure virtual
getGeneralComments() const =0bpp::SequenceContainerpure virtual
getNumberOfSequences() const =0bpp::SequenceContainerpure virtual
getSequence(const std::string &name) const =0bpp::SequenceContainerpure virtual
getSequencesNames() const =0bpp::SequenceContainerpure virtual
hasSequence(const std::string &name) const =0bpp::SequenceContainerpure virtual
operator()(const std::string &sequenceName, size_t elementIndex)=0bpp::SequenceContainerpure virtual
operator()(const std::string &sequenceName, size_t elementIndex) const =0bpp::SequenceContainerpure virtual
removeSequence(const std::string &name)=0bpp::SequenceContainerpure virtual
SequenceContainer()bpp::SequenceContainerinline
setComments(const std::string &name, const Comments &comments)=0bpp::SequenceContainerpure virtual
setGeneralComments(const Comments &comments)=0bpp::SequenceContainerpure virtual
setSequence(const std::string &name, const Sequence &sequence, bool checkName)=0bpp::SequenceContainerpure virtual
setSequencesNames(const std::vector< std::string > &names, bool checkNames)=0bpp::SequenceContainerpure virtual
toString(const std::string &name) const =0bpp::SequenceContainerpure virtual
valueAt(const std::string &sequenceName, size_t elementIndex)=0bpp::SequenceContainerpure virtual
valueAt(const std::string &sequenceName, size_t elementIndex) const =0bpp::SequenceContainerpure virtual
~SequenceContainer()bpp::SequenceContainerinlinevirtual