|
bpp-seq
2.2.0
|
This is the complete list of members for bpp::SequenceContainerTools, including all inherited members.
| append(SequenceContainer &seqCont1, const SequenceContainer &seqCont2, bool checkNames=true) | bpp::SequenceContainerTools | inlinestatic |
| append(SequenceContainer &seqCont1, const OrderedSequenceContainer &seqCont2, bool checkNames=true) | bpp::SequenceContainerTools | inlinestatic |
| convertAlphabet(const SequenceContainer &seqCont, SequenceContainer &outputCont) | bpp::SequenceContainerTools | inlinestatic |
| convertContainer(const ContFrom &input, ContTo &output) | bpp::SequenceContainerTools | inlinestatic |
| createContainerOfSpecifiedSize(const Alphabet *alphabet, size_t size) | bpp::SequenceContainerTools | static |
| createContainerWithSequenceNames(const Alphabet *alphabet, const std::vector< std::string > &seqNames) | bpp::SequenceContainerTools | static |
| getCodonPosition(const SequenceContainer &sequences, size_t pos) | bpp::SequenceContainerTools | static |
| getCounts(const SequenceContainer &sequences, std::map< int, int > &) | bpp::SequenceContainerTools | static |
| getFrequencies(const SequenceContainer &sequences, std::map< int, double > &f, double pseudoCount=0) | bpp::SequenceContainerTools | static |
| getSelectedSequences(const OrderedSequenceContainer &sequences, const SequenceSelection &selection, SequenceContainer &outputCont) | bpp::SequenceContainerTools | static |
| getSelectedSequences(const SequenceContainer &sequences, const std::vector< std::string > &selection, SequenceContainer &outputCont, bool strict=true) | bpp::SequenceContainerTools | static |
| keepOnlySelectedSequences(OrderedSequenceContainer &sequences, const SequenceSelection &selection) | bpp::SequenceContainerTools | static |
| merge(const SequenceContainer &seqCont1, const SequenceContainer &seqCont2, SequenceContainer &outputCont) | bpp::SequenceContainerTools | inlinestatic |
| SequenceContainerTools() | bpp::SequenceContainerTools | inline |
| sequencesHaveTheSameLength(const SequenceContainer &sequences) | bpp::SequenceContainerTools | static |
| ~SequenceContainerTools() | bpp::SequenceContainerTools | inlinevirtual |