bpp-seq
2.2.0
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This is the complete list of members for bpp::SequenceContainerTools, including all inherited members.
append(SequenceContainer &seqCont1, const SequenceContainer &seqCont2, bool checkNames=true) | bpp::SequenceContainerTools | inlinestatic |
append(SequenceContainer &seqCont1, const OrderedSequenceContainer &seqCont2, bool checkNames=true) | bpp::SequenceContainerTools | inlinestatic |
convertAlphabet(const SequenceContainer &seqCont, SequenceContainer &outputCont) | bpp::SequenceContainerTools | inlinestatic |
convertContainer(const ContFrom &input, ContTo &output) | bpp::SequenceContainerTools | inlinestatic |
createContainerOfSpecifiedSize(const Alphabet *alphabet, size_t size) | bpp::SequenceContainerTools | static |
createContainerWithSequenceNames(const Alphabet *alphabet, const std::vector< std::string > &seqNames) | bpp::SequenceContainerTools | static |
getCodonPosition(const SequenceContainer &sequences, size_t pos) | bpp::SequenceContainerTools | static |
getCounts(const SequenceContainer &sequences, std::map< int, int > &) | bpp::SequenceContainerTools | static |
getFrequencies(const SequenceContainer &sequences, std::map< int, double > &f, double pseudoCount=0) | bpp::SequenceContainerTools | static |
getSelectedSequences(const OrderedSequenceContainer &sequences, const SequenceSelection &selection, SequenceContainer &outputCont) | bpp::SequenceContainerTools | static |
getSelectedSequences(const SequenceContainer &sequences, const std::vector< std::string > &selection, SequenceContainer &outputCont, bool strict=true) | bpp::SequenceContainerTools | static |
keepOnlySelectedSequences(OrderedSequenceContainer &sequences, const SequenceSelection &selection) | bpp::SequenceContainerTools | static |
merge(const SequenceContainer &seqCont1, const SequenceContainer &seqCont2, SequenceContainer &outputCont) | bpp::SequenceContainerTools | inlinestatic |
SequenceContainerTools() | bpp::SequenceContainerTools | inline |
sequencesHaveTheSameLength(const SequenceContainer &sequences) | bpp::SequenceContainerTools | static |
~SequenceContainerTools() | bpp::SequenceContainerTools | inlinevirtual |