bpp-seq  2.2.0
bpp::SequenceContainerTools Member List

This is the complete list of members for bpp::SequenceContainerTools, including all inherited members.

append(SequenceContainer &seqCont1, const SequenceContainer &seqCont2, bool checkNames=true)bpp::SequenceContainerToolsinlinestatic
append(SequenceContainer &seqCont1, const OrderedSequenceContainer &seqCont2, bool checkNames=true)bpp::SequenceContainerToolsinlinestatic
convertAlphabet(const SequenceContainer &seqCont, SequenceContainer &outputCont)bpp::SequenceContainerToolsinlinestatic
convertContainer(const ContFrom &input, ContTo &output)bpp::SequenceContainerToolsinlinestatic
createContainerOfSpecifiedSize(const Alphabet *alphabet, size_t size)bpp::SequenceContainerToolsstatic
createContainerWithSequenceNames(const Alphabet *alphabet, const std::vector< std::string > &seqNames)bpp::SequenceContainerToolsstatic
getCodonPosition(const SequenceContainer &sequences, size_t pos)bpp::SequenceContainerToolsstatic
getCounts(const SequenceContainer &sequences, std::map< int, int > &)bpp::SequenceContainerToolsstatic
getFrequencies(const SequenceContainer &sequences, std::map< int, double > &f, double pseudoCount=0)bpp::SequenceContainerToolsstatic
getSelectedSequences(const OrderedSequenceContainer &sequences, const SequenceSelection &selection, SequenceContainer &outputCont)bpp::SequenceContainerToolsstatic
getSelectedSequences(const SequenceContainer &sequences, const std::vector< std::string > &selection, SequenceContainer &outputCont, bool strict=true)bpp::SequenceContainerToolsstatic
keepOnlySelectedSequences(OrderedSequenceContainer &sequences, const SequenceSelection &selection)bpp::SequenceContainerToolsstatic
merge(const SequenceContainer &seqCont1, const SequenceContainer &seqCont2, SequenceContainer &outputCont)bpp::SequenceContainerToolsinlinestatic
SequenceContainerTools()bpp::SequenceContainerToolsinline
sequencesHaveTheSameLength(const SequenceContainer &sequences)bpp::SequenceContainerToolsstatic
~SequenceContainerTools()bpp::SequenceContainerToolsinlinevirtual