bpp-seq  2.2.0
bpp::SequenceMask Member List

This is the complete list of members for bpp::SequenceMask, including all inherited members.

afterSequenceChanged(const SymbolListEditionEvent &event)bpp::SequenceMaskvirtual
afterSequenceDeleted(const SymbolListDeletionEvent &event)bpp::SequenceMaskvirtual
afterSequenceInserted(const SymbolListInsertionEvent &event)bpp::SequenceMaskvirtual
afterSequenceSubstituted(const SymbolListSubstitutionEvent &event)bpp::SequenceMaskinlinevirtual
beforeSequenceChanged(const SymbolListEditionEvent &event)bpp::SequenceMaskinlinevirtual
beforeSequenceDeleted(const SymbolListDeletionEvent &event)bpp::SequenceMaskinlinevirtual
beforeSequenceInserted(const SymbolListInsertionEvent &event)bpp::SequenceMaskinlinevirtual
beforeSequenceSubstituted(const SymbolListSubstitutionEvent &event)bpp::SequenceMaskinlinevirtual
clone() constbpp::SequenceMaskinlinevirtual
getMask() constbpp::SequenceMaskinline
getPartAnnotation(size_t pos, size_t len) constbpp::SequenceMaskinlinevirtual
getSize() constbpp::SequenceMaskinline
getType() constbpp::SequenceMaskinlinevirtual
init(const Sequence &seq)bpp::SequenceMaskinlinevirtual
isRemovable() constbpp::SequenceMaskinlinevirtual
isShared() constbpp::SequenceMaskinlinevirtual
isValidWith(const SequenceWithAnnotation &sequence, bool throwException=true) constbpp::SequenceMaskinlinevirtual
MASKbpp::SequenceMaskstatic
mask_bpp::SequenceMaskprivate
merge(const SequenceAnnotation &anno)bpp::SequenceMaskinlinevirtual
operator[](size_t i) constbpp::SequenceMaskinline
removable_bpp::SequenceMaskprivate
SequenceMask(size_t size=0, bool removable=true)bpp::SequenceMaskinline
SequenceMask(const std::vector< bool > &mask, bool removable=true)bpp::SequenceMaskinline
setMask(const std::vector< bool > &mask)bpp::SequenceMaskinline
setMask(size_t pos, bool mask)bpp::SequenceMaskinline
setMask(size_t pos, const std::vector< bool > &mask)bpp::SequenceMaskinline
~SequenceMask()bpp::SequenceMaskinlinevirtual
~SymbolListListener()bpp::SymbolListListenerinlinevirtual