bpp-seq
2.2.0
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This is the complete list of members for bpp::SequenceQuality, including all inherited members.
afterSequenceChanged(const SymbolListEditionEvent &event) | bpp::SequenceQuality | virtual |
afterSequenceDeleted(const SymbolListDeletionEvent &event) | bpp::SequenceQuality | virtual |
afterSequenceInserted(const SymbolListInsertionEvent &event) | bpp::SequenceQuality | virtual |
afterSequenceSubstituted(const SymbolListSubstitutionEvent &event) | bpp::SequenceQuality | inlinevirtual |
beforeSequenceChanged(const SymbolListEditionEvent &event) | bpp::SequenceQuality | inlinevirtual |
beforeSequenceDeleted(const SymbolListDeletionEvent &event) | bpp::SequenceQuality | inlinevirtual |
beforeSequenceInserted(const SymbolListInsertionEvent &event) | bpp::SequenceQuality | inlinevirtual |
beforeSequenceSubstituted(const SymbolListSubstitutionEvent &event) | bpp::SequenceQuality | inlinevirtual |
clone() const | bpp::SequenceQuality | inlinevirtual |
DEFAULT_QUALITY_VALUE | bpp::SequenceQuality | static |
getPartAnnotation(size_t pos, size_t len) const | bpp::SequenceQuality | inlinevirtual |
getScores() const | bpp::SequenceQuality | inline |
getSize() const | bpp::SequenceQuality | inline |
getType() const | bpp::SequenceQuality | inlinevirtual |
init(const Sequence &seq) | bpp::SequenceQuality | inlinevirtual |
isRemovable() const | bpp::SequenceQuality | inlinevirtual |
isShared() const | bpp::SequenceQuality | inlinevirtual |
isValidWith(const SequenceWithAnnotation &sequence, bool throwException=true) const | bpp::SequenceQuality | inlinevirtual |
merge(const SequenceAnnotation &anno) | bpp::SequenceQuality | inlinevirtual |
operator[](size_t i) const | bpp::SequenceQuality | inline |
operator[](size_t i) | bpp::SequenceQuality | inline |
QUALITY_SCORE | bpp::SequenceQuality | static |
qualScores_ | bpp::SequenceQuality | private |
removable_ | bpp::SequenceQuality | private |
SequenceQuality(size_t size=0, bool removable=true) | bpp::SequenceQuality | inline |
SequenceQuality(const std::vector< int > &quality, bool removable=true) | bpp::SequenceQuality | inline |
setScore(size_t pos, int score) | bpp::SequenceQuality | inline |
setScores(const std::vector< int > &scores) | bpp::SequenceQuality | inline |
setScores(size_t pos, const std::vector< int > &scores) | bpp::SequenceQuality | inline |
~SequenceQuality() | bpp::SequenceQuality | inlinevirtual |
~SymbolListListener() | bpp::SymbolListListener | inlinevirtual |