bpp-seq  2.2.0
bpp::SimpleIndexDistance Member List

This is the complete list of members for bpp::SimpleIndexDistance, including all inherited members.

AlphabetIndex2()bpp::AlphabetIndex2inline
clone() constbpp::SimpleIndexDistanceinlinevirtual
getAlphabet() constbpp::SimpleIndexDistanceinlinevirtual
getAlphabetIndex1() constbpp::SimpleIndexDistanceinline
getAlphabetIndex1()bpp::SimpleIndexDistanceinline
getIndex(int state1, int state2) constbpp::SimpleIndexDistanceinlinevirtual
getIndex(const std::string &state1, const std::string &state2) constbpp::SimpleIndexDistanceinlinevirtual
getIndexMatrix() constbpp::SimpleIndexDistanceinlinevirtual
index_bpp::SimpleIndexDistanceprivate
isSymmetric() constbpp::SimpleIndexDistanceinlinevirtual
operator=(const SimpleIndexDistance &sid)bpp::SimpleIndexDistanceinline
setSymmetric(bool yn)bpp::SimpleIndexDistanceinline
SimpleIndexDistance(AlphabetIndex1 *index)bpp::SimpleIndexDistanceinline
SimpleIndexDistance(const SimpleIndexDistance &sid)bpp::SimpleIndexDistanceinline
sym_bpp::SimpleIndexDistanceprivate
~AlphabetIndex2()bpp::AlphabetIndex2inlinevirtual
~SimpleIndexDistance()bpp::SimpleIndexDistanceinlinevirtual