bpp-seq
2.2.0
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This is the complete list of members for bpp::SymbolListTools, including all inherited members.
changeGapsToUnknownCharacters(SymbolList &l) | bpp::SymbolListTools | static |
changeUnresolvedCharactersToGaps(SymbolList &l) | bpp::SymbolListTools | static |
getCounts(const SymbolList &list, std::map< int, size_t > &counts) | bpp::SymbolListTools | inlinestatic |
getCounts(const SymbolList &list1, const SymbolList &list2, std::map< int, std::map< int, size_t > > &counts) | bpp::SymbolListTools | inlinestatic |
getCounts(const SymbolList &list, std::map< int, double > &counts, bool resolveUnknowns) | bpp::SymbolListTools | static |
getCounts(const SymbolList &list1, const SymbolList &list2, std::map< int, std::map< int, double > > &counts, bool resolveUnknowns) | bpp::SymbolListTools | static |
getFrequencies(const SymbolList &list, std::map< int, double > &frequencies, bool resolveUnknowns=false) | bpp::SymbolListTools | static |
getFrequencies(const SymbolList &list1, const SymbolList &list2, std::map< int, std::map< int, double > > &frequencies, bool resolveUnknowns=false) | bpp::SymbolListTools | static |
getGCContent(const SymbolList &list, bool ignoreUnresolved=true, bool ignoreGap=true) | bpp::SymbolListTools | static |
getNumberOfDistinctPositions(const SymbolList &l1, const SymbolList &l2) | bpp::SymbolListTools | static |
getNumberOfPositionsWithoutGap(const SymbolList &l1, const SymbolList &l2) | bpp::SymbolListTools | static |
SymbolListTools() | bpp::SymbolListTools | inline |
~SymbolListTools() | bpp::SymbolListTools | inlinevirtual |