bpp-seq  2.2.0
bpp::SymbolListTools Member List

This is the complete list of members for bpp::SymbolListTools, including all inherited members.

changeGapsToUnknownCharacters(SymbolList &l)bpp::SymbolListToolsstatic
changeUnresolvedCharactersToGaps(SymbolList &l)bpp::SymbolListToolsstatic
getCounts(const SymbolList &list, std::map< int, size_t > &counts)bpp::SymbolListToolsinlinestatic
getCounts(const SymbolList &list1, const SymbolList &list2, std::map< int, std::map< int, size_t > > &counts)bpp::SymbolListToolsinlinestatic
getCounts(const SymbolList &list, std::map< int, double > &counts, bool resolveUnknowns)bpp::SymbolListToolsstatic
getCounts(const SymbolList &list1, const SymbolList &list2, std::map< int, std::map< int, double > > &counts, bool resolveUnknowns)bpp::SymbolListToolsstatic
getFrequencies(const SymbolList &list, std::map< int, double > &frequencies, bool resolveUnknowns=false)bpp::SymbolListToolsstatic
getFrequencies(const SymbolList &list1, const SymbolList &list2, std::map< int, std::map< int, double > > &frequencies, bool resolveUnknowns=false)bpp::SymbolListToolsstatic
getGCContent(const SymbolList &list, bool ignoreUnresolved=true, bool ignoreGap=true)bpp::SymbolListToolsstatic
getNumberOfDistinctPositions(const SymbolList &l1, const SymbolList &l2)bpp::SymbolListToolsstatic
getNumberOfPositionsWithoutGap(const SymbolList &l1, const SymbolList &l2)bpp::SymbolListToolsstatic
SymbolListTools()bpp::SymbolListToolsinline
~SymbolListTools()bpp::SymbolListToolsinlinevirtual