bpp::VectorSequenceContainer Member List

This is the complete list of members for bpp::VectorSequenceContainer, including all inherited members.

AbstractSequenceContainer(const Alphabet *alpha)	bpp::AbstractSequenceContainer	inline
AbstractSequenceContainer(const AbstractSequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
AbstractSequenceContainer(const SequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
addSequence(const Sequence &sequence, bool checkName=true)	bpp::VectorSequenceContainer	virtual
addSequence(const Sequence &sequence, size_t sequenceIndex, bool checkName=true)	bpp::VectorSequenceContainer	virtual
clear()	bpp::VectorSequenceContainer	virtual
clone() const	bpp::VectorSequenceContainer	inline
createEmptyContainer() const	bpp::VectorSequenceContainer	virtual
deleteGeneralComments()	bpp::AbstractSequenceContainer	inlinevirtual
deleteSequence(const std::string &name)	bpp::VectorSequenceContainer	inlinevirtual
deleteSequence(size_t sequenceIndex)	bpp::VectorSequenceContainer	virtual
getAlphabet() const	bpp::AbstractSequenceContainer	inlinevirtual
getComments(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
getComments(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getContent(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
getContent(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getGeneralComments() const	bpp::AbstractSequenceContainer	inlinevirtual
getName(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
getNumberOfSequences() const	bpp::VectorSequenceContainer	inlinevirtual
getSequence(const std::string &name) const	bpp::VectorSequenceContainer	virtual
getSequence(size_t sequenceIndex) const	bpp::VectorSequenceContainer	virtual
getSequence_(size_t i)	bpp::VectorSequenceContainer	protected
getSequence_(const std::string &name)	bpp::VectorSequenceContainer	protected
getSequencePosition(const std::string &name) const	bpp::VectorSequenceContainer	virtual
getSequencesNames() const	bpp::VectorSequenceContainer	virtual
hasSequence(const std::string &name) const	bpp::VectorSequenceContainer	virtual
operator()(const std::string &sequenceName, size_t elementIndex)	bpp::VectorSequenceContainer	inlinevirtual
operator()(const std::string &sequenceName, size_t elementIndex) const	bpp::VectorSequenceContainer	inlinevirtual
operator()(size_t sequenceIndex, size_t elementIndex)	bpp::VectorSequenceContainer	inlinevirtual
operator()(size_t sequenceIndex, size_t elementIndex) const	bpp::VectorSequenceContainer	inlinevirtual
operator=(const VectorSequenceContainer &vsc)	bpp::VectorSequenceContainer
operator=(const OrderedSequenceContainer &osc)	bpp::VectorSequenceContainer
operator=(const SequenceContainer &osc)	bpp::VectorSequenceContainer
bpp::AbstractSequenceContainer::operator=(const AbstractSequenceContainer &sc)	bpp::AbstractSequenceContainer	inline
OrderedSequenceContainer()	bpp::OrderedSequenceContainer	inline
removeSequence(const std::string &name)	bpp::VectorSequenceContainer	inlinevirtual
removeSequence(size_t sequenceIndex)	bpp::VectorSequenceContainer	virtual
SequenceContainer()	bpp::SequenceContainer	inline
sequences_	bpp::VectorSequenceContainer	mutableprivate
setComments(const std::string &name, const Comments &comments)	bpp::VectorSequenceContainer	inlinevirtual
setComments(size_t sequenceIndex, const Comments &comments)	bpp::VectorSequenceContainer	virtual
setGeneralComments(const Comments &comments)	bpp::AbstractSequenceContainer	inlinevirtual
setSequence(const std::string &name, const Sequence &sequence, bool checkName=true)	bpp::VectorSequenceContainer	inlinevirtual
setSequence(size_t sequenceIndex, const Sequence &sequence, bool checkName=true)	bpp::VectorSequenceContainer	virtual
setSequencesNames(const std::vector< std::string > &names, bool checkNames=true)	bpp::VectorSequenceContainer	virtual
toString(const std::string &name) const	bpp::AbstractSequenceContainer	inlinevirtual
toString(size_t sequenceIndex) const	bpp::AbstractSequenceContainer	inlinevirtual
valueAt(const std::string &sequenceName, size_t elementIndex)	bpp::VectorSequenceContainer	inlinevirtual
valueAt(const std::string &sequenceName, size_t elementIndex) const	bpp::VectorSequenceContainer	inlinevirtual
valueAt(size_t sequenceIndex, size_t elementIndex)	bpp::VectorSequenceContainer	inlinevirtual
valueAt(size_t sequenceIndex, size_t elementIndex) const	bpp::VectorSequenceContainer	inlinevirtual
VectorSequenceContainer(const std::vector< const Sequence *> &vs, const Alphabet *alpha)	bpp::VectorSequenceContainer
VectorSequenceContainer(const Alphabet *alpha)	bpp::VectorSequenceContainer	inline
VectorSequenceContainer(const VectorSequenceContainer &vsc)	bpp::VectorSequenceContainer
VectorSequenceContainer(const OrderedSequenceContainer &osc)	bpp::VectorSequenceContainer
VectorSequenceContainer(const SequenceContainer &osc)	bpp::VectorSequenceContainer
~AbstractSequenceContainer()	bpp::AbstractSequenceContainer	inlinevirtual
~OrderedSequenceContainer()	bpp::OrderedSequenceContainer	inlinevirtual
~SequenceContainer()	bpp::SequenceContainer	inlinevirtual
~VectorSequenceContainer()	bpp::VectorSequenceContainer	inlinevirtual