Advanced features
=================

Some of the features of deepTools are not self-explanatory. Below, we provide links to longer expositions on these more advanced features:

 * :doc:`feature/blacklist`
 * :doc:`feature/metagene`
 * :doc:`feature/read_extension`
 * :doc:`feature/unscaled_regions`
 * :doc:`feature/read_offsets`
 * :doc:`feature/deepBlue`
 * :doc:`feature/plotFingerprint_QC_metrics`
 * :doc:`feature/plotly`
 * :doc:`feature/effectiveGenomeSize`