# STOCKHOLM 1.0 #=GF ID fn3 #=GF AC PF00041 #=GF DE Fibronectin type III domain #=GF AU Sonnhammer ELL #=GF GA 7.8 -1.0 #=GF TC 7.7 7.7 #=GF TC 7.9 0.1 #=GF AL HMM_simulated_annealing #=GF SE Swissprot_feature_table #=GF TP Domain #=GF BM hmmbuild -F HMM_ls SEED #=GF BM hmmcalibrate --seed 0 HMM_ls #=GF BM hmmbuild -f -F HMM_fs SEED #=GF BM hmmcalibrate --seed 0 HMM_fs #=GF AM globalfirst #=GF RN [1] #=GF RM 90384924 #=GF RT Structural design and molecular evolution of a cytokine #=GF RT receptor superfamily. #=GF RA Bazan JF; #=GF RL PNAS USA 1990;87:6934-6938. #=GF RN [2] #=GF RM 95106303 #=GF RT Tracing the spread of fibronectin type III domains in #=GF RT bacterial glycohydrolases. #=GF RA Little E, Bork P, Doolittle R; #=GF RL J Mol Evol 1994;39:631-643. #=GF RC Definition of fibronectin domains #=GF RN [3] #=GF RM 85284965 #=GF RT Primary structure of human fibronectin: differential #=GF RT splicing may generate at least 10 polypeptides from a #=GF RT single gene. #=GF RA Kornblihtt AR, Umezawa K, Vibe-Pedersen K, Baralle FE; #=GF RL EMBO J. 1985;4:1755-1759. #=GF DR PROSITE; PDOC00214; #=GF DR PRINTS; PR00014; #=GF DR SCOP; 1ttf; sf; #=GF DR SMART; FN3; #=GF DR HOMSTRAD; fn3; #=GF DC The following Pfam-B families contain sequences that according to Prodom #=GF DC are members of this Pfam-A family. #=GF DR PFAMB; PB001437; #=GF DR PFAMB; PB004758; #=GF DR PFAMB; PB007041; #=GF DR PFAMB; PB007646; #=GF DR PFAMB; PB012739; #=GF DR PFAMB; PB016725; #=GF DR PFAMB; PB016744; #=GF DR PFAMB; PB018458; #=GF DR PFAMB; PB019013; #=GF DR PFAMB; PB019702; #=GF DR PFAMB; PB020271; #=GF DR PFAMB; PB021019; #=GF DR PFAMB; PB026405; #=GF DR PFAMB; PB029923; #=GF DR PFAMB; PB033713; #=GF DR PFAMB; PB034308; #=GF DR PFAMB; PB047628; #=GF DR PFAMB; PB049097; #=GF DR PFAMB; PB052872; #=GF DR PFAMB; PB063723; #=GF DR PFAMB; PB073211; #=GF DR PFAMB; PB073567; #=GF DR PFAMB; PB073869; #=GF DR PFAMB; PB073994; #=GF DR PFAMB; PB074195; #=GF DR PFAMB; PB074218; #=GF DR PFAMB; PB074322; #=GF DR PFAMB; PB074352; #=GF DR PFAMB; PB074375; #=GF DR PFAMB; PB074967; #=GF DR PFAMB; PB075286; #=GF DR PFAMB; PB075336; #=GF DR PFAMB; PB075604; #=GF DR PFAMB; PB075661; #=GF DR PFAMB; PB075739; #=GF DR PFAMB; PB075827; #=GF DR PFAMB; PB076019; #=GF DR PFAMB; PB076058; #=GF DR PFAMB; PB076103; #=GF DR PFAMB; PB076165; #=GF DR PFAMB; PB076280; #=GF DR PFAMB; PB076339; #=GF DR INTERPRO; IPR003961; #=GF DR PDB; 1qg3 A; 1220; 1310; #=GF DR PDB; 1qg3 B; 1220; 1310; #=GF DR PDB; 1qg3 A; 1127; 1208; #=GF DR PDB; 1qg3 B; 1127; 1208; #=GF DR PDB; 1cfb ; 717; 799; #=GF SQ 108 #=GS EPA1_HUMAN/333-435 AC P21709 #=GS EPA2_HUMAN/329-420 AC P29317 #=GS EPA3_CHICK/325-421 AC P29318 #=GS EPB2_CHICK/326-422 AC P28693 #=GS NRCA_CHICK/623-709 AC P35331 #=GS MYPF_CHICK/630-716 AC P16419 #=GS MPSF_CHICK/801-887 AC Q02173 #=GS MPSF_CHICK/699-785 AC Q02173 #=GS MPSF_CHICK/499-585 AC Q02173 #=GS MPSF_CHICK/371-457 AC Q02173 #=GS KMLS_CHICK/1318-1403 AC P11799 #=GS AXO1_CHICK/602-692 AC P28685 #=GS MPSF_CHICK/600-684 AC Q02173 #=GS LAR_DROME/322-404 AC P16621 #=GS MYPF_CHICK/923-1008 AC P16419 #=GS TIE1_HUMAN/644-729 AC P35590 #=GS NCA1_BOVIN/509-597 AC P31836 #=GS EPA4_MOUSE/441-525 AC Q03137 #=GS EPB2_CHICK/437-521 AC P28693 #=GS NRCA_CHICK/928-1014 AC P35331 #=GS LAR_DROME/909-995 AC P16621 #=GS ITB4_HUMAN/1641-1728 AC P16144 #=GS ITB4_HUMAN/1528-1612 AC P16144 #=GS ITB4_HUMAN/1220-1310 AC P16144 #=GS PTP9_DROME/171-259 AC P35832 #=GS LAR_DROME/709-800 AC P16621 #=GS LAR_DROME/417-503 AC P16621 #=GS EPA2_HUMAN/436-519 AC P29317 #=GS ITB4_HUMAN/1127-1208 AC P16144 #=GS CONT_CHICK/799-884 AC P14781 #=GS AXO1_CHICK/807-896 AC P28685 #=GS CAML_HUMAN/812-907 AC P32004 #=GS PTP1_DROME/958-1044 AC P35992 #=GS NRG_DROME/917-1007 AC P20241 #=GS TENA_CHICK/1494-1571 AC P10039 #=GS TENA_CHICK/956-1033 AC P10039 #=GS TENA_CHICK/1406-1483 AC P10039 #=GS TENA_CHICK/774-853 AC P10039 #=GS TENA_CHICK/1317-1395 AC P10039 #=GS FINC_BOVIN/1327-1406 AC P07589 #=GS FINC_RAT/1266-1346 AC P04937 #=GS TENA_CHICK/864-945 AC P10039 #=GS FINC_BOVIN/780-858 AC P07589 #=GS FINC_BOVIN/1782-1861 AC P07589 #=GS FINC_BOVIN/1417-1499 AC P07589 #=GS FINC_BOVIN/1601-1680 AC P07589 #=GS FINC_BOVIN/1511-1590 AC P07589 #=GS FINC_BOVIN/875-955 AC P07589 #=GS TENA_CHICK/593-671 AC P10039 #=GS FINC_BOVIN/1693-1771 AC P07589 #=GS FINC_BOVIN/1142-1225 AC P07589 #=GS PTP1_DROME/405-485 AC P35992 #=GS FINC_BOVIN/1236-1316 AC P07589 #=GS PHB_ALCFA/344-418 AC P12625 #=GS CHIX_STROI/169-240 AC Q05638 #=GS CHIT_STRLI/142-219 AC P36909 #=GS GUNB_CELFI/651-733 AC P26225 #=GS CHI1_BACCI/465-542 AC P20533 #=GS APU_THETY/1165-1248 AC P16950 #=GS APU_THETY/928-1009 AC P16950 #=GS FINC_BOVIN/577-660 AC P07589 #=GS NRG_DROME/815-905 AC P20241 #=GS PTP6_DROME/332-425 AC P16620 #=GS FAS2_SCHAM/530-616 AC P22648 #=GS PTPZ_HUMAN/312-401 AC P23471 #=GS NCA1_BOVIN/610-691 AC P31836 #=GS FAS2_SCHAM/642-735 AC P22648 #=GS TIE2_HUMAN/543-626 AC Q02763 #=GS TENA_CHICK/682-767 AC P10039 #=GS UFO_HUMAN/327-411 AC P30530 #=GS TIE1_HUMAN/545-632 AC P35590 #=GS 7LES_DROME/1799-1891 AC P13368 #=GS NRG_DROME/717-799 AC P20241 #=GS NRCA_CHICK/726-810 AC P35331 #=GS NGCA_CHICK/700-794 AC Q03696 #=GS TIE2_HUMAN/639-724 AC Q02763 #=GS LAR_DROME/515-598 AC P16621 #=GS PTP6_DROME/236-321 AC P16620 #=GS TIE2_HUMAN/444-529 AC Q02763 #=GS TIE1_HUMAN/446-533 AC P35590 #=GS PTPK_MOUSE/290-376 AC P35822 #=GS PTPB_HUMAN/1355-1434 AC P23467 #=GS PTP1_DROME/583-661 AC P35992 #=GS PTP1_DROME/312-394 AC P35992 #=GS PTP1_DROME/217-301 AC P35992 #=GS PTP1_DROME/123-205 AC P35992 #=GS PTPB_HUMAN/1261-1344 AC P23467 #=GS PTP1_DROME/864-944 AC P35992 #=GS PTPB_HUMAN/1173-1250 AC P23467 #=GS PTPB_HUMAN/1085-1162 AC P23467 #=GS PTPB_HUMAN/467-543 AC P23467 #=GS PTPB_HUMAN/995-1074 AC P23467 #=GS PTPB_HUMAN/731-808 AC P23467 #=GS PTPB_HUMAN/643-725 AC P23467 #=GS PTPB_HUMAN/554-632 AC P23467 #=GS PTPB_HUMAN/907-984 AC P23467 #=GS PTPB_HUMAN/112-192 AC P23467 #=GS IL7R_HUMAN/129-221 AC P16871 #=GS FINC_BOVIN/689-768 AC P07589 #=GS KALM_CHICK/178-271 AC P33005 #=GS TENA_HUMAN/1529-1608 AC P24821 #=GS TENA_CHICK/1227-1306 AC P10039 #=GS TENA_CHICK/1136-1215 AC P10039 #=GS TENA_HUMAN/1255-1335 AC P24821 #=GS TENA_CHICK/1045-1124 AC P10039 #=GS 7LES_DROVI/1917-1997 AC P20806 #=GS PTPB_HUMAN/22-103 AC P23467 #=GS KALM_CHICK/544-642 AC P33005 #=GS ITB4_HUMAN/1220-1310 DR PDB; 1qg3 A; 1220; 1310; #=GS ITB4_HUMAN/1220-1310 DR PDB; 1qg3 B; 1220; 1310; #=GS ITB4_HUMAN/1127-1208 DR PDB; 1qg3 A; 1127; 1208; #=GS ITB4_HUMAN/1127-1208 DR PDB; 1qg3 B; 1127; 1208; #=GS NRG_DROME/717-799 DR PDB; 1cfb ; 717; 799; EPA1_HUMAN/333-435 P.SAP.RNLSFSA...SGTQLSLRWEPPAD..TGGRQDVRYSVRCS..QC EPA2_HUMAN/329-420 P.SAP.HYLTAVGM..GA.KVELRWTPPQD..SGGREDIVYSVTCEQCWP EPA3_CHICK/325-421 P.SAP.RNV.ISNI..NETSVILDWSWPLD..TGGRKDVTFNIIC...KK EPB2_CHICK/326-422 P.SAP.QAV.ISSV..NETSLMLEWTPPRD..SGGREDLVYNIIC...KS NRCA_CHICK/623-709 P.NPP.LDLELTGQ..LERSIELSWVPGEE...NNSPITNFVIEY...ED MYPF_CHICK/630-716 P.DPP.QSVRVTSV..GEDWAVLSWEAPPF..DGGMPITGYLMER...KK MPSF_CHICK/801-887 P.GPA.YDLTVCEV..RNTSLVLLWKAPVY..EGKSPITGYLVDY...KE MPSF_CHICK/699-785 P.SYP.HGITLLNC..DGHSMTLGWKAPKY..SGGSPILGYYIDKR...E MPSF_CHICK/499-585 P.GPP.TNVHASEI..SKTYVVLSWDPPVP...RGREPLTYFIEK...SM MPSF_CHICK/371-457 P.GAP.MDVKCHDA..NRDYVIVTWKPPNT..TSQNPVIGYFVDK...CE KMLS_CHICK/1318-1403 P.DPPAGTPCASDI..RSSSLTLSWYGSSY..DGGSAVQSYTVEI...WN AXO1_CHICK/602-692 PPGPP.GGVVVRDI..GDTTVQLSWSRGFD...NHSPIARYSIEAR...T MPSF_CHICK/600-684 P.SAP.GRVVATRN..TKTSVVVQWDKPK....HEENLYGYYIDY...SV LAR_DROME/322-404 P.TAP.TDVQISEV..TATSVRLEWSYK.....GPEDLQYYVIQY...KP MYPF_CHICK/923-1008 P.GPP.QAVRVMEV..WGSNALLQWEPPKD..DGNAEISGYTVQK...AD TIE1_HUMAN/644-729 P.PAP.RHLHAQAL..SDSEIQLTWKHPEA...LPGPISKYVVEV...QV NCA1_BOVIN/509-597 P.SSP.SIDQVEP...YSSTAQVQFDEPEA..TGGVPILKYKAEWR...A EPA4_MOUSE/441-525 P.SSI.ALVQAKEV..TRYSVALAWLEPDR...PNGVILEYEVKY...YE EPB2_CHICK/437-521 P.SAV.SIMHQVSR..TVDSITLSWSQPDQ...PNGVILDYELQY...YE NRCA_CHICK/928-1014 P.SPP.SFLKITNP..TLDSLTLEWGSPTH...PNGVLTSYILKF...QP LAR_DROME/909-995 PGGPP.SNITIRFQ..TPDVLCVTWDPPTRE.HRNGIITRYDVQFH..KK ITB4_HUMAN/1641-1728 P.SAP.GPLVFTAL..SPDSLQLSWERPRR...PNGDIVGYLVTC...EM ITB4_HUMAN/1528-1612 P.DTP.TRLVFSAL..GPTSLRVSWQEPR....CERPLQGYSVEY...QL ITB4_HUMAN/1220-1310 P.SEP.GRLAFNVV..SSTVTQLSWAEPAE...TNGEITAYEVCY...GL #=GR ITB4_HUMAN/1220-1310 SS C.CCC.CEEEEEEC..CTTCCEEEEECCCS...CCCCEEEEEEEC...TT #=GR ITB4_HUMAN/1220-1310 SA 6.221.36423442..44332211135347...864302212113...76 PTP9_DROME/171-259 P.SKP.QNLTILDV..SANSITMSWHPPKN...QNGAIAGYHVFH...IH LAR_DROME/709-800 P.GDP.QDVKATPL..NSTSIHVSWKPPLEK.DRNGIIRGYHIHA...QE LAR_DROME/417-503 E.SAP.RNVQVRTL..SSSTMVITWEPPET...PNGQVTGYKV.Y...YT EPA2_HUMAN/436-519 Q.TEP.PKVRLEGR..STTSLSVSWSIPPP...QQSRVWKYEVTYR...K ITB4_HUMAN/1127-1208 L.GAP.QNPNAKAA..GSRKIHFNWLPP......SGKPMGYRVKY...WI #=GR ITB4_HUMAN/1127-1208 SS C.CCC.CEEEEEEC..CTTCCEEEEECC......CSCCCCEEEEE...EE #=GR ITB4_HUMAN/1127-1208 SA 6.221.36423442..443322111353......47864302212...11 CONT_CHICK/799-884 PTEVP.TDVSVKVL..SSSEISVSWHHVT.....EKSVEGYQIRY...WA AXO1_CHICK/807-896 PKVAP.FRVTAKAV..LSSEMDVSWEPVEQG.DMTGVLLGYEIRY...WK CAML_HUMAN/812-907 P.QAI.PELEGIEIL.NSSAVLVKWRPVDLA.QVKGHLRGYNVTY...WR PTP1_DROME/958-1044 P.GRV.ERFHPTDV..QPSEINFEWSLPSS..EANGVIRQFSIAY...TN NRG_DROME/917-1007 P.SPV.QGLDAYPL..GSSAFMLHWKKPLY...PNGKLTGYKIYY...EE TENA_CHICK/1494-1571 L.DAP.KDLSATEV..QSETAVITWRPP......RAPVTDYLLTY...ES TENA_CHICK/956-1033 L.DNP.KDLEVSDP..TETTLSLRWRRP......VAKFDRYRLTY...VS TENA_CHICK/1406-1483 L.DSP.SGLVVMNI..TDSEALATWQPA......IAAVDNYIVSY...SS TENA_CHICK/774-853 L.DAP.SQIEAKDV..TDTTALITWSKP......LAEIEGIELTY...GP TENA_CHICK/1317-1395 V.GSP.KGISFSDI..TENSATVSWTPP......RSRVDSYRVSY...VP FINC_BOVIN/1327-1406 L.DSP.SGIDFSDI..TANSFTVHWIAP......RATITGYRIRHH...P FINC_RAT/1266-1346 V.PQL.TDLSFVDI..TDSSIGLRWTPLN.....SSTIIGYRITV...VA TENA_CHICK/864-945 L.DAP.RNLKRVSQ..TDNSITLEWKNS......HANIDNYRIKF...AP FINC_BOVIN/780-858 P.DAP.PDPTVDQV..DDTSIVVRWSRP......RAPITGYRIVY...SP FINC_BOVIN/1782-1861 I.DAP.SNLRFLAT..TPNSLLVSWQPP......RARITGYIIKY...EK FINC_BOVIN/1417-1499 S.DVP.RDLEVIAA..TPTSLLISWDAP......AVTVRYYRITY...GE FINC_BOVIN/1601-1680 I.PAP.TNLKFTQV..TPTSLTAQWTAP......NVQLTGYRVRV...TP FINC_BOVIN/1511-1590 I.DKP.SQMQVTDV..QDNSISVRWLPS......SSPVTGYRVTT...AP FINC_BOVIN/875-955 KVPPP.RDLQFVEV..TDVKITIMWTPP......ESPVTGYRVDV...IP TENA_CHICK/593-671 V.SPP.TELTVTNV..TDKTVNLEWKHE.......NLVNEYLVTY...VP FINC_BOVIN/1693-1771 V.SPP.RRARVTDA..TETTITISWRTK......TETITGFQVDA...IP FINC_BOVIN/1142-1225 PLSPP.TNLHLEANP.DTGVLTVSWERST.....TPDITGYRITT...TP PTP1_DROME/405-485 P.LPV.RNLRSINDD.KTNTMIITWEADP.....ASTQDEYRIVYHE.LE FINC_BOVIN/1236-1316 V.PPP.TDLRFTNV..GPDTMRVTWAPPS.....SIELTNLLVRY...SP PHB_ALCFA/344-418 G.SAP.TGLAVTAT..TSTSVSLSWNAV.......ANASSYGV.YR.... CHIX_STROI/169-240 P.PAPPTGLRTGSV..TATSVALSWSPV.......TGATGYAV.YR.... CHIT_STRLI/142-219 P.SAP.GTPTASNI..TDTSVKLSWSAAT....DDKGVKNYDV.LR.... GUNB_CELFI/651-733 P.TTP.GTPVATGV..TTVGASLSWAASTD...AGSGVAGYEL.YR...V CHI1_BACCI/465-542 P.SVP.GNARSTGV..TANSVTLAWNAST....DNVGVTGYNV.YN.... APU_THETY/1165-1248 P.TAP.V.LQQPGI..ESSRVTLNWSPSA....DDVAIFGYEIYK...SS APU_THETY/928-1009 A.PQPITDLKAVS...GNGKVDLSWSVV.......DKAVSYNI.YR...S FINC_BOVIN/577-660 T.SGP.VQVIITETPSQPNSHPIQWSAPE.....SSHISKYILRW...KP NRG_DROME/815-905 PLDAP.TNFTMRQIT.SSTSGYMAWTPVSEE.SVRGHFKGYKIQT...WT PTP6_DROME/332-425 Y.DPI.FIPKVETTGSTASTITIGWNPPPP..DLIDYIQYYELIV...SE FAS2_SCHAM/530-616 P.SAV.LQVKMDVM..TATTVTFKFFGPGN..DGGLPTKNYAVQY...KQ PTPZ_HUMAN/312-401 S.SEP.ENVQADPE..NYTSLLVTWERPRV..VYDTMIEKFAVLY...QQ NCA1_BOVIN/610-691 P.SAP.KLEGQMGE..DGNSIKVKLIKQDD...GGSPIRHYLVKYR...A FAS2_SCHAM/642-735 T.SGT.ENEVVVSP..YPNRYELRWQVPAD...NGEPITHYSVKS...CP TIE2_HUMAN/543-626 L.PPP.RGLNLLPK..SQTTLNLTWQPIFP...SSEDDFYVEVERR...S TENA_CHICK/682-767 L.PAP.EGLKFKSV..RETSVQVEWDPL......SISFDGWELVFRNMQK UFO_HUMAN/327-411 L.GPP.ENISATR...NGSQAFVHWQEPRA..PLQGTLLGYRLAY...QG TIE1_HUMAN/545-632 PLLQP.WLEGWHVE..GTDRLRVSWSLPLV..PGPLVGDGFLLRL...WD 7LES_DROME/1799-1891 P.SPP.RNFSVRVL..SPRELEVSWLPPEQ...LRSESVYYTLHW...QQ NRG_DROME/717-799 ....P.DNVVGQGT..EPNNLVISWTPMPEI.EHNAPNFHYYVSW...K. #=GR NRG_DROME/717-799 SS ....C.CCCCCCCC..EEEEEEECSSEEEEE.EECCCCTTSCCCE...E. #=GR NRG_DROME/717-799 SA ....9.84520430..514324538430203.0544233506152...0. NRCA_CHICK/726-810 ....P.SNVQGIGS..EPDNLVITWESLKGF.QSNGPGLQYKVSWR..QK NGCA_CHICK/700-794 PERNP.GGVHGEGN..ETGNLVITWEPLPPQ.AWNAPWARYRVQWR...P TIE2_HUMAN/639-724 P.PQP.ENIKISNI..THSSAVISWTILD.....GYSISSITIRY...KV LAR_DROME/515-598 P.SQP.SNFRATDI..GETAVTLQWTKPTH...SSENIVHYELYW...ND PTP6_DROME/236-321 V.PQV.SIDFAKAV..GANKIYLNWTVND....GNDPIQKFFITL...QE TIE2_HUMAN/444-529 L.PKPLNAPNVIDT..GHNFAVINISSEPY..FGDGPIKSKKLLY...KP TIE1_HUMAN/446-533 P.PVPLAAPRLLTK..QSRQLVVSPLVSFS...GDGPISTVRLHYR..PQ PTPK_MOUSE/290-376 P.PRPIAPPQLLGV..GPTYLLIQLNANSI..IGDGPIILKEVEYR...M PTPB_HUMAN/1355-1434 P.DKI.QNLHCRPQ..NSTAIACSWIPP......DSDFDGYSIECR...K PTP1_DROME/583-661 P.NPP.RNMTIETV..RSNSVLVHWSPPE.....SGEFTEYSIRYR...T PTP1_DROME/312-394 P.LRP.LNVTFDRDFITSNSFRVLWEAPK....GISEFDKYQVSV...AT PTP1_DROME/217-301 P.NTP.GKFIVWFR..NETTLLVLWQPPY....PAGIYTHYKVSI...EP PTP1_DROME/123-205 P.DPP.SNLSVQVR..SGKNAIILWSPPT.....QGSYTAFKIKV...LG PTPB_HUMAN/1261-1344 P.SPP.SLMSFADI..ANTSLAITWKGPP....DWTDYNDFELQW...LP PTP1_DROME/864-944 P.EPI.TQLHATNI..TDTEISLRWDLP......KGEYNDFDIAY...LT PTPB_HUMAN/1173-1250 P.ASV.SHLRGSNRN.TTDSLWFNWSPA......SGDFDFYELIL...YN PTPB_HUMAN/1085-1162 P.AAV.TDLRITEN..STRHLSFRWTAS......EGELSWYNIFL...YN PTPB_HUMAN/467-543 P.LAV.LQLRVKHA..NETSLSIMWQTP......VAEWEKYIISL...AD PTPB_HUMAN/995-1074 P.ASV.QGVIADNAY.SSYSLIVSWQKA......AGVAERYDILL...LT PTPB_HUMAN/731-808 P.DKV.QGVSVSNSA.RSDYLRVSWVHA......TGDFDHYEVTI...KN PTPB_HUMAN/643-725 P.SSV.SGVTVNNSG.RNDYLSVSWLVA......PGDVDNYEVTL...SH PTPB_HUMAN/554-632 P.AQV.TDLHVANQG.MTSSLFTNWTQA......QGDVEFYQVLL...IH PTPB_HUMAN/907-984 P.SAV.KNIHISPNG.ATDSLTVNWTPG......GGDVDSYTVSA...FR PTPB_HUMAN/112-192 P.PAR.FGVSKEKT..TSTGLHVWWTPS......SGKVTSYEVQL...FD IL7R_HUMAN/129-221 P.EAP.FDLSVIYRE.GANDFVVTFNTSHLQ.KKYVKVLMHDVAYR..QE FINC_BOVIN/689-768 P.VVA.TSESVTEI..TASSFVVSWVSA......SDTVSGFRVEY...EL KALM_CHICK/178-271 P.LKPRKELKFIEL..QSGDLEVKWSSKFN...ISIEPVIYVVQRR..WN TENA_HUMAN/1529-1608 L.PLL.ENLTISDI..NPYGFTVSWMAS......ENAFDSFLVTV...VD TENA_CHICK/1227-1306 E.PEV.DNLLVSDA..TPDGFRLSWTAD......DGVFDSFVLKIR..DT TENA_CHICK/1136-1215 H.PEV.GELTVSDI..TPESFNLSWTTT......NGDFDAFTIEI...ID TENA_HUMAN/1255-1335 E.VPDMGNLTVTEV..SWDALRLNWTTP......DGTYDQFTIQV...QE TENA_CHICK/1045-1124 E.PEL.GNLSVSET..GWDGFQLTWTAA......DGAYENFVIQV...QQ 7LES_DROVI/1917-1997 S.YAPLPPLQLIEL..NAYGMTLAWPGT......PDALSSLTLEC...QS PTPB_HUMAN/22-103 AEPER.CNFTLAESKASSHSVSIQWRIL.......GSPCNFSLIY...SS KALM_CHICK/544-642 L.AKP.ENLSASFIV.QEGNITGHFSWKISKAVLHQPMTGFQVTW...AE #=GC SS_cons C.CCC.CEEEEEEC..CTTCCEEEEECCCCE.ECCCCCCCEEEEE...EC #=GC SA_cons 6.224.55422441..433323223342343.0755433303122...34 #=GC seq_cons P.ssP.pslphpsh..sssslplsWpss......suslssYplph....p EPA1_HUMAN/333-435 QGTAQDGGPCQPCGVGVHFSPGARALT....TP..AVHVNGLEPYANYTF EPA2_HUMAN/329-420 E.SGECGP....CEASVRYS...EPPHGL.TRT..SVTVSDLEPHMNYTF EPA3_CHICK/325-421 CGGSSKICE...PCSDNVRF...LPRQTG.LTNT.TVTVVDLLAHTNYTF EPB2_CHICK/326-422 CGSGRGACT...RCGDNVQF...APRQLGLTEP..RIYISDLLAHTQYTF NRCA_CHICK/623-709 GLHEPG........VWHYQT...EVPG....SH..TTVQLKLSPYVNYSF MYPF_CHICK/630-716 KGSMRW........MKLNFE...VFPD....T...TYESTKMIEGVFYEM MPSF_CHICK/801-887 VDTED..........WITAN...EKPT....SHR.YFKVTDLHQGHTYVF MPSF_CHICK/699-785 ANHKN..........WHEVNSSVISRT....I....YTVEDLTEDAFYEF MPSF_CHICK/499-585 VGSGS..........WQRVNAQVAVKS....P...RYAVFDLAEGKPYVF MPSF_CHICK/371-457 VGLEN..........WVQCN...DAPV....KIC.KYPVTGLYEGRSYIF KMLS_CHICK/1318-1403 SVDNK..........WTDLT...TCRS....T...SFNVQDLQADREYKF AXO1_CHICK/602-692 LLSNKWKQ.....MRTNPVN...IEGN....AE..TAQVVNLIPWMDYEF MPSF_CHICK/600-684 VGSNQWE.......PANHKP...INYN....R....FVVHGLETGEQYIF LAR_DROME/322-404 KNANQ..........AFSEI...SGII....TM..YYVVRALSPYTEYEF MYPF_CHICK/923-1008 TRTME..........WFTVL...EHSR....PT..RCTVSELVMGNEYRF TIE1_HUMAN/644-729 AGGAGD.........PLWID...VDRP....EET.STIIRGLNASTRYLF NCA1_BOVIN/509-597 MGEEVW........HSKWYD...AKEA....SMEGIVTIVGLKPETTYAV EPA4_MOUSE/441-525 KDQN...........ERSYR...IVRT....AAR.NTDIKGLNPLTSYVF EPB2_CHICK/437-521 KNLSE..........LNSTA...VKSP....TN..TVTVQNLKAGTIYVF NRCA_CHICK/928-1014 INNTHEL......GPLVEIR...IPAN....ES..SLILKNLNYSTRYKF LAR_DROME/909-995 IDHGL..........GSERN...MTLR....K....AVFTNLEENTEYIF ITB4_HUMAN/1641-1728 AQGGGPA.......TAFRVD...GDSP....ES..RLTVPGLSENVPYKF ITB4_HUMAN/1528-1612 LNGGE..........LHRLN...IPNP....AQT.SVVVEDLLPNHSYVF ITB4_HUMAN/1220-1310 VNDDNRPI.....GPMKKVL...VDNP....KNR.MLLIENLRESQPYRY #=GR ITB4_HUMAN/1220-1310 SS CCGGCCEE.....EECSSCE...EECC....CCC.TCCEEEEEEEEECTC #=GR ITB4_HUMAN/1220-1310 SA 44673454.....4346432...3227....543.223211110011586 PTP9_DROME/171-259 DNQTGVE......IVKNSRN...SVET....LI..HFELQNLRPYTDYRV LAR_DROME/709-800 LRDEGKGF....LNEPFKFD...VVDT....L...EFNVTGLQPDTKYSI LAR_DROME/417-503 TNSNQPE......ASWNSQM...VDNS....E...LTTVSDVTPHAIYTV EPA2_HUMAN/436-519 KGDS............NSYN...VRRT....EGF.SVTLDDLAPDTTYLV ITB4_HUMAN/1127-1208 QGDSES.........EAHLL...DSKV....P...SVELTNLYPYCDYEM #=GR ITB4_HUMAN/1127-1208 SS CTTCCG.........GCCEE...EECS....S...CEEECCCCCTCCEEE #=GR ITB4_HUMAN/1127-1208 SA 376446.........73454...4346....4...323227543223211 CONT_CHICK/799-884 AHDKEA........AAQRVQ...VSNQ....EY..STKLENLKPNTRYHI AXO1_CHICK/807-896 DGDKEEA.......ADRVRT...AGLV....T...SAHVTGLNPNTKYHV CAML_HUMAN/812-907 EGSQRKHSK..RHIHKDHVV...VPAN....TT..SVILSGLRPYSSYHL PTP1_DROME/958-1044 INNLT..........DAGMQ...DFES....EEA.FGVIKNLKPGETYVF NRG_DROME/917-1007 V.KESYVGE..RREYDPHIT...DPRV....T...RMKMAGLKPNSKYRI TENA_CHICK/1494-1571 I.DGR..........VKEVI...LDPE....TT..SYTLTELSPSTQYTV TENA_CHICK/956-1033 P.SGK..........KNEME...IPVD....ST..SFILRGLDAGTEYTI TENA_CHICK/1406-1483 EDEP...........EVTQM...VSGN....TV..EYDLNGLRPATEYTL TENA_CHICK/774-853 KDVPGD.........RTTID...LSED....EN..QYSIGNLRPHTEYEV TENA_CHICK/1317-1395 ITGGT..........PNVVT...VDGS....KT..RTKLVKLVPGVDYNV FINC_BOVIN/1327-1406 ENMGGR.........PREDR...VPPS....RN..SITLTNLNPGTEYVV FINC_RAT/1266-1346 AGEGIP.........IFEDF...VDSS....VG..YYTVTGLEPGIDYDI TENA_CHICK/864-945 ISGGD..........HTELT...VPKGNQ.ATT..RATLTGLRPGTEYGI FINC_BOVIN/780-858 SVEGS..........STELN...LPET....AN..SVTLSDLQPGVQYNI FINC_BOVIN/1782-1861 PGSPPR........EVVPRP...RPGV....T...EATITGLEPGTEYTI FINC_BOVIN/1417-1499 TGGSSP.........VQEFT...VPGS....KS..TATISGLKPGVDYTI FINC_BOVIN/1601-1680 KEKTGP.........MKEIN...LAPD....SS..SVVVSGLMVATKYEV FINC_BOVIN/1511-1590 KNGPGP.........SKTKT...VGPD....QT..EMTIEGLQPTVEYVV FINC_BOVIN/875-955 VNLPGE........HGQRLP...VSRN....T...FAEVTGLSPGVTYHF TENA_CHICK/593-671 TSSGGL.........DLQFT...VPGN....QT..SATIHELEPGVEYFI FINC_BOVIN/1693-1771 ANGQT..........PIQRT...IRPD....VR..SYTITGLQPGTDYKI FINC_BOVIN/1142-1225 TNGQQG........YSLEEV...VHAD....QS..SCTFENLSPGLEYNV PTP1_DROME/405-485 TFNGD..........TSTLT...TDRT....R....FTLESLLPGRNYSL FINC_BOVIN/1236-1316 VKNEED.........VAELS...ISPS....DN..AVVLTNLLPGTEYLV PHB_ALCFA/344-418 .NGS............KVGS...ATAT....A....YTDSGLIAGTTYSY CHIX_STROI/169-240 .DGV............KVAT...ASGT....S....ATVTGLTPDTAYAF CHIT_STRLI/142-219 .DGA............KVAT...VTGT....T....YTDNGLTKGTAYSY GUNB_CELFI/651-733 QGTTQ..........TLVGT...TTAA....A....YILRDLTPGTAYSY CHI1_BACCI/465-542 .GAN............LATS...VTGT....T....ATISGLTAGTSYTF APU_THETY/1165-1248 SETGPF.........IKIAT...VSDS....VY..NYVDTDVVNGNVYYY APU_THETY/928-1009 TVKGG..........LYEKI...ASNV....TQI.TYTDTEVTNGLKYVY FINC_BOVIN/577-660 KNSPDR.........WKEAT...IPGH....LN..SYTIKGLRPGVVYEG NRG_DROME/815-905 ENEGEE........GLREIH...VKGD....TH..NALVTQFKPDSKNYA PTP6_DROME/332-425 SGEVPKVI.....EEAIYQQ...NSRN....L...PYMFDKLKTATDYEF FAS2_SCHAM/530-616 DSQGW..........EDALN...RTWP....VDS.PYILENLKPQTRYNF PTPZ_HUMAN/312-401 LDGEDQ........TKHEFL...TDGY....QDL.GAILNNLLPNMSYVL NCA1_BOVIN/610-691 LSSEW..........KPEIR...LPSG....SD..HVMLKSLDWNAEYEV FAS2_SCHAM/642-735 VEKYDTEWRL.LPYPCQEHK...LEGQ....AT..TFQLESLQPDTHYKV TIE2_HUMAN/543-626 VQKSD..........QQNIK...VPGN....LT..SVLLNNLHPREQYVV TENA_CHICK/682-767 KDDNG..........DITSS...LKRP....ET..SYMQPGLAPGQQYNV UFO_HUMAN/327-411 QDTPE..........VLMDI...GLRQ....EV..TLELQGDGSVSNLTV TIE1_HUMAN/545-632 GTRGQ..........ERREN...VSSP....QAR.TALLTGLTPGTHYQL 7LES_DROME/1799-1891 ELDGENVQD..RREWEAHER...RLET....AG..THRLTGIKPGSGYSL NRG_DROME/717-799 .RDIPAA......AWENNNI...FDWR....QN..NIVIADQPTFVKYLI #=GR NRG_DROME/717-799 SS .EEEEEE......SSSTTCC...EEEE....EE..EETTCSEEEEECCSS #=GR NRG_DROME/717-799 SA .001210......5245942...5425....67..044836215060213 NRCA_CHICK/726-810 DVDDE..........WTSVV...VANV....S...KYIVSGTPTFVPYEI NGCA_CHICK/700-794 LEEPGGGGPS.GGFPWAEST...VDAP....P....VVVGGLPPFSPFQI TIE2_HUMAN/639-724 QGKNE..........DQHVDV.KIKNA....TII.QYQLKGLEPETAYQV LAR_DROME/515-598 TYANQ..........AHHKR...ISNS....E...AYTLDGLYPDTLYYI PTP6_DROME/236-321 AGTPTFT.......YHKDFI...NGSH....T...SYILDHFKPNTTYFL TIE2_HUMAN/444-529 VNHYEA.........WQHIQ...VTNE....I....VTLNYLEPRTEYEL TIE1_HUMAN/446-533 DSTMD..........WSTIV...VDPS....E...NVTLMNLRPKTGYSV PTPK_MOUSE/290-376 T.SGS..........WTETH...AVNA....P...TYKLWHLDPDTEYEI PTPB_HUMAN/1355-1434 MDTQEV.........EFSRK...LEKE....KS..LLNIMMLVPHKRYLV PTP1_DROME/583-661 DSEQQ..........WVRLP...SVRS....T...EADITDMTKGEKYTI PTP1_DROME/312-394 TRRQS..........TVPRS...NEPV....AF..SDFRDIAEPGKTFNV PTP1_DROME/217-301 PDANDSVL.....YVEKEGE...PPGP....A...QAAFKGLVPGRAYNI PTP1_DROME/123-205 LSEASSS.......YNRTFQ...VNDN....TF..QHSVKELTPGATYQV PTPB_HUMAN/1261-1344 RDALTV.........FNPYN...NRKS....E...GRIVYGLRPGRSYQF PTP1_DROME/864-944 A.DNL..........LAQNM...TTRN....E....ITISDLRPHRNYTF PTPB_HUMAN/1173-1250 PNGTKK.........ENWKD...KDLT....E....WRFQGLVPGRKYVL PTPB_HUMAN/1085-1162 PDGNLQ.........ERAQV...DPLV....Q...SFSFQNLLQGRMYKM PTPB_HUMAN/467-543 R.DLL..........LIHKS...LSKD....AK..EFTFTDLVPGRKYMA PTPB_HUMAN/995-1074 ENGIL..........LRNTS...EPAT....TK..QHKFEDLTPGKKYKI PTPB_HUMAN/731-808 KNNF...........IQTKS...IPKS....EN..ECVFVQLVPGRLYSV PTPB_HUMAN/643-725 DGKV...........VQSLV...IAKS....VR..ECSFSSLTPGRLYTV PTPB_HUMAN/554-632 ENVV...........IKNES...ISSE....TS..RYSFHSLKSGSLYSV PTPB_HUMAN/907-984 H.SQK..........VDSQT...IPKH....VF..EHTFHRLEAGEQYQI PTPB_HUMAN/112-192 ENNQKIQ......GVQIQES...TSWN....E....YTFFNLTAGSKYNI IL7R_HUMAN/129-221 KDENK..........WTHVN...LSST....KL..TLLQRKLQPAAMYEI FINC_BOVIN/689-768 SEEGDE.........PQYLD...LPST....AT..SVNIPDLLPGRKYTV KALM_CHICK/178-271 QGIHPSED.....DATNWQT...VAQT....TDE.RVQLSDIRASRWYQF TENA_HUMAN/1529-1608 SGKLLD.........PQEFT...LSGT....QR..KLELRGLITGIGYEV TENA_CHICK/1227-1306 KRKSD..........PLELI...VPGH....ER..THDITGLKEGTEYEI TENA_CHICK/1136-1215 SNRLLE.........PMEFN...ISGN....SR..TAHISGLSPSTDFIV TENA_HUMAN/1255-1335 ADQVEE.........AHNLT...VPGS....LR..SMEIPGLRAGTPYTV TENA_CHICK/1045-1124 SDNPEE.........TWNIT...VPGG....QH..SVNVTGLKANTPYNV 7LES_DROVI/1917-1997 LREQ............LQFN...VAGN....HT..QMRLAPLQPKTRYSC PTPB_HUMAN/22-103 DTLGAA........LCPTFR...IDNT....TY..GCNLQDLQAGTIYNF KALM_CHICK/544-642 VTTESRQNSLPNSIISQSQI...LPAD....HY..VLTVPNLRPSMLYRL #=GC SS_cons CCCCCCEE.....CCCCCCE...EECC....CCC.CECECCEEEEECCCC #=GC SA_cons 44443434.....5355643...4336....563.233425323131333 #=GC seq_cons tsssp..........hpphs...lsss....p...phslssLpPsspYph EPA1_HUMAN/333-435 NVE.AQNGVSGLGSSGHAS EPA2_HUMAN/329-420 TVE.ARNGV........SG EPA3_CHICK/325-421 EID.AVNGVSD...LSTLS EPB2_CHICK/326-422 EIQ.AVNGVTD...QSPFS NRCA_CHICK/623-709 RVI.AVNEIGR....SQPS MYPF_CHICK/630-716 RVF.AVNAIGV....SQPS MPSF_CHICK/801-887 KVR.AVNDAGV....GKSS MPSF_CHICK/699-785 KIA.AANVVGI....GHPS MPSF_CHICK/499-585 RVL.SANKHGI....SDPS MPSF_CHICK/371-457 RVR.AVNSAGI....SRPS KMLS_CHICK/1318-1403 RVR.AANVYGI....SEPS AXO1_CHICK/602-692 RVL.ASNILGV....GEPS MPSF_CHICK/600-684 RVK.AVNAVGF....SENS LAR_DROME/322-404 YVI.AVNNIGR....GPPS MYPF_CHICK/923-1008 RVY.SENVCGT....SQEP TIE1_HUMAN/644-729 RMR.ASI.QGL....GDWS NCA1_BOVIN/509-597 RLA.ALNGKGL....GEIS EPA4_MOUSE/441-525 HVR.ARTAAGY....GDFS EPB2_CHICK/437-521 QVR.ARTVAGY....GRYS NRCA_CHICK/928-1014 YFN.AQTSV......GSGS LAR_DROME/909-995 RVR.AYTKQGA....GPFS ITB4_HUMAN/1641-1728 KVQ.ARTTEGF....GPER ITB4_HUMAN/1528-1612 RVR.AQSQEGW....GRER ITB4_HUMAN/1220-1310 TVK.ARNGAGW....GPER #=GR ITB4_HUMAN/1220-1310 SS CCC.CCCCCEE....ECCC #=GR ITB4_HUMAN/1220-1310 SA 533.4135333....3234 PTP9_DROME/171-259 IVK.AFTTKNE....GEPS LAR_DROME/709-800 QVA.ALTRKGD....GDRS LAR_DROME/417-503 RVQ.AYTSMGA....GPMS EPA2_HUMAN/436-519 QVQ.ALTQEGQ....GAGS ITB4_HUMAN/1127-1208 KVC.AYGAQGE....GPYS #=GR ITB4_HUMAN/1127-1208 SS EEE.EEECTCC....CCCC #=GR ITB4_HUMAN/1127-1208 SA 110.0115865....3341 CONT_CHICK/799-884 DVS.AFNSAGY....GPPS AXO1_CHICK/807-896 SVR.AYNRAGA....GPPS CAML_HUMAN/812-907 EVQ.AFNGRGS....GPAS PTP1_DROME/958-1044 KIQ.AKTAIGF....GPER NRG_DROME/917-1007 SIT.ATTKMGE....GSEH TENA_CHICK/1494-1571 KLQ.ALSRS.......MRS TENA_CHICK/956-1033 SLV.AEKGR.......HKS TENA_CHICK/1406-1483 RVH.AVKDA.......QKS TENA_CHICK/774-853 TLI.SRRGD.......MES TENA_CHICK/1317-1395 NII.SVKGF.......EES FINC_BOVIN/1327-1406 SIV.ALNSK.......EES FINC_RAT/1266-1346 SVI.TLING.......GES TENA_CHICK/864-945 GVT.AVRQD.......RES FINC_BOVIN/780-858 TIY.AVEEN.......QES FINC_BOVIN/1782-1861 QVI.ALKNN.......QKS FINC_BOVIN/1417-1499 TVY.AVTGRGD....SPAS FINC_BOVIN/1601-1680 SVY.ALKDT.......LTS FINC_BOVIN/1511-1590 SVY.AQNQN.......GES FINC_BOVIN/875-955 KVF.AVNQG.......RES TENA_CHICK/593-671 RVF.AILKN.......KKS FINC_BOVIN/1693-1771 HLY.TLNDN.......ARS FINC_BOVIN/1142-1225 SVY.TVKDD.......KES PTP1_DROME/405-485 SVQ.AVSKK.......MES FINC_BOVIN/1236-1316 SVS.SVYEQ.......HES PHB_ALCFA/344-418 TVT.AVDPTAG...ESQPS CHIX_STROI/169-240 QVA.AVNGA.......GES CHIT_STRLI/142-219 SVK.ARDTADQ...TGPAS GUNB_CELFI/651-733 VVK.AKDVAGN...VSAAS CHI1_BACCI/465-542 TIK.AKDAAGN...LSAAS APU_THETY/1165-1248 KVV.AVDTSYN....RTAS APU_THETY/928-1009 AVT.AVDNDGN...ESALS FINC_BOVIN/577-660 QLI.SVQHY......GQRE NRG_DROME/815-905 RIL.AYNGRFN....GPPS PTP6_DROME/332-425 RVR.ACSDLTKT..CGPWS FAS2_SCHAM/530-616 RFA.AQNEVGF....GPWS PTPZ_HUMAN/312-401 QIV.AICTNGL...YGKYS NCA1_BOVIN/610-691 YVV.AENQQ.......GKS FAS2_SCHAM/642-735 EVR.ATNAIGN....SVPG TIE2_HUMAN/543-626 RAR..VNTKAQ....GEWS TENA_CHICK/682-767 SLH.IVKNNTR...GPGLS UFO_HUMAN/327-411 CVA.AYTAAGD....GPWS TIE1_HUMAN/545-632 DVQ.LYHCTLL....GPAS 7LES_DROME/1799-1891 WVQ.AHATPTK....SNSS NRG_DROME/717-799 KVV.AINDR.......GES #=GR NRG_DROME/717-799 SS EEE.EEEEE.......EEE #=GR NRG_DROME/717-799 SA 030.10200.......020 NRCA_CHICK/726-810 KVQ.ALNDLGY...APEPS NGCA_CHICK/700-794 RVQ.AVNGAGK....GPEA TIE2_HUMAN/639-724 DIF.AENNIGS....SNPA LAR_DROME/515-598 WLA.ARSQRGE....GATT PTP6_DROME/236-321 RIV.GKNSIGN....GQPT TIE2_HUMAN/444-529 CVQ.LVRRGEG....GEGH TIE1_HUMAN/446-533 RVQLSRPGEGG...EGAWG PTPK_MOUSE/290-376 RVLLTRPGEGG...TGLPG PTPB_HUMAN/1355-1434 SIK.VQSAG.......MTS PTP1_DROME/583-661 QVN.TVSFG.......VES PTP1_DROME/312-394 IVK.TVSGK.......VTS PTP1_DROME/217-301 SVQ.TMSED.......EIS PTP1_DROME/123-205 QAY.TIYDG.......KES PTPB_HUMAN/1261-1344 NVK.TVSGDSW....KTYS PTP1_DROME/864-944 TVV.VRSGTESS..VLRSS PTPB_HUMAN/1173-1250 WVV.THSGD........LS PTPB_HUMAN/1085-1162 VIV.THSGE........LS PTPB_HUMAN/467-543 TVT.SISGD........LK PTPB_HUMAN/995-1074 QIL.TVSGG.......LFS PTPB_HUMAN/731-808 TVT.TKSGQ........YE PTPB_HUMAN/643-725 TIT.TRSGKYE...NHSFS PTPB_HUMAN/554-632 VVT.TVSGG.......ISS PTPB_HUMAN/907-984 MIA.SVSGS........LK PTPB_HUMAN/112-192 AIT.AVSGG.......KRS IL7R_HUMAN/129-221 KVR.SIPDHYFKGFWSEWS FINC_BOVIN/689-768 NVY.EISEE.......GEQ KALM_CHICK/178-271 RVA.AVNVHGT...RGFTA TENA_HUMAN/1529-1608 MVS.GFTQG.......HQT TENA_CHICK/1227-1306 ELY.GVSSG.......RRS TENA_CHICK/1136-1215 YLY.GISHG.......FRT TENA_HUMAN/1255-1335 TLH.GEVRG.......HST TENA_CHICK/1045-1124 TLY.GVIRG.......YRT 7LES_DROVI/1917-1997 RLA.LAYAATP....GAPI PTPB_HUMAN/22-103 KII.SLDEE........RT KALM_CHICK/544-642 EVQ.VLTTGGE....GPAT #=GC SS_cons EEE.EEECCCC....CCCC #=GC SA_cons 221.2123454....3232 #=GC seq_cons pVt.Ahsst.......t.S //