# STOCKHOLM 1.0

#=GF ID   MADE1
#=GF AC   DF0000629.2
#=GF DE   MADE1 (MAriner Derived Element 1), a TcMar-Mariner DNA transposon
#=GF AU   Finn RD, Hubley R, Jones T, Jurka J, Smit A, Wheeler T
#=GF SE   Repbase
#=GF GA   15.98;
#=GF TC   32.00;
#=GF NC   15.90;
#=GF BM   hmmbuild --hand --maxinsertlen 10 HMM.ann SEED.ann
#=GF SM   nhmmer -Z 3102 --dfamtblout DFAMOUT -E 100  --noali HMM.ann
#=GF SM   dfamseq
#=GF CT   Type; DNA Transposon;
#=GF CT   Class; Cut and Paste;
#=GF CT   Superfamily; TcMar-Mariner;
#=GF MS   TaxId:9606 TaxName:Homo sapiens
#=GF RN   [1]
#=GF RM   8643651
#=GF RT   Tiggers and DNA transposon fossils in the human genome.
#=GF RA   Smit AF, Riggs AD;
#=GF RL   Proc Natl Acad Sci U S A 1996;93:1443-1448
#=GF DR   Repbase; MADE1;
#=GF CC   Resembles an internal deletion product of Mariner1; has 37 bp
#=GF CC   TIRs and a TA target site.
#=GF SQ   100
#
# (This example file for the HMMER tutorial is a subsample of the original
#  Dfam MADE1 Seed alignment, which contains 1997 sequences. The data above
#  is an example of what the annotation on a Dfam file looks like.)
#

H.sapiens_6.1/113836283-113836209  TTAGATTGATGCAAAAGTAATTGC...T.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............A............T......................................GGC.....A.........A...AA.A.........................CA...GCAATTACTTTTG...CACCAAC....
H.sapiens_20.1/19570829-19570750   TTAGGTTGGTGCAAAAGTAATTGC...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................C..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...GCAATTACTTTTG...CACCTATCTAA
H.sapiens_X.1/131791847-131791768  TTAGGTTGGTGCAAAAGTAATTGC...A.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AC.A.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_2.1/224304169-224304093  ...GGTTAGTGCAAAAGCAATTGT...G.G...T.TTT.T..............................TG......CTA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA...........................CC...GCAATAAATTTTG...CACCAACCTAA
H.sapiens_3.1/53365959-53366028    ...GGTTGGTGCAAAA.TATTTGT...G.T...T.TCT.T...............................G......ACA..........TT...A.....................................ATT.....................................................................................GC.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_10.1/67084128-67084206   .TAGGTTGGTGCAAATGTAATTGT...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GAC.....A.........A...AA.A.........................CT...GCAATTATTTTTG...CACCAACCTAA
H.sapiens_11.1/29455850-29455927   ..AGTTTGGTGCAAAATTAATCGC...A.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................C..............AA...........T......................................GAT.....A.........A...AA.A.........................CA...GCAATTACTTTTG...CACCAACCTAA
H.sapiens_1.1/150796716-150796636  TTAGGTTGGTGCAAAAGAAATTGT...G.A...T.TTT.T..............................TG......CCA..........TT...T.....................................TTTT................A..............AA...........T......................................GGC.....A.........A...AA.A.........................AT...GCAATTACTTTTG...CACCAACCTAA
H.sapiens_18.1/32399915-32399995   TTATGTTGGTGCAAAAGCAATTGC...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................C..............AA..........AT......................................GGC.....A.........A...AA.A.........................CC...GCAATTGCTTTTG...CACCAACCTAA
H.sapiens_18.1/22603150-22603213   TTAGCTTGGTGTAAAAGTAATTGT...G.T...T.TTT.T...............................G......CCA..................................................................................................................................................................AA.A.........................CC...GCAATTACTTTTG...CACCAACCTAA
H.sapiens_7.1/155664673-155664594  TTAGGTTGGTGCAAAAGTAATCGC...A.G...T.TTT.T...............................G......CTG..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...GCACTTACTTTTG...CACTAAGCTAA
H.sapiens_7.1/70331740-70331819    TTAGGTTGGTGCAAATGTGATTGC...A.G...T.GTT.T...............................G......CAA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...ACAATTACATGTG...CAGCAACCTAA
H.sapiens_1.1/189861575-189861652  TTAGATTGGCATAAAAGTAATTGA...G.G...T.TTT.T...............................G......C.A..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA...........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_16.1/5810783-5810690     ...GGTTGGTGCAAAAGTAACTGC...G.G...T.TTT.T...............................G......TCA..........TT...A.....................................CTTTCAAATAACTTTCAATAT..............AA...........T......................................GGC.....A.........A...AACC.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_X.1/8946935-8946859      TTAGGTTGGTGCAAAAGTAATAGT...G.G...A.GTT.C...............................G......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA...........................CT...GCGATTACTTTTG...CACCAACCT..
H.sapiens_4.1/104343346-104343261  TTAGGTTGGTGCAAAAGTAATTGC...A.G...T.TTT.T...............................G......CCA..........TA...G.....................................CTTT..........AAAAAAA..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...ACAGTCACTTTTG...CACCAACCTAA
H.sapiens_16.1/26692675-26692751   TTAGGTTGGCTCAAAAGTAATTGC...G.A...T.TTT.................................G......CCA..........TT...A.....................................CTTT................C..............AA...........T......................................AGC.....A.........A...AA...........................CC...ATAATTACTTTTG...CACCAACCTA.
H.sapiens_2.1/31209529-31209462    TTAGGTTGGTGCAAAAGTAATTGC...G.T...T.TTT.T...............................G......CCA..........TT...A.....................................CCTT................T..............AG...........T......................................GGA.....A.........A...AA.A.........................CC...ACAATTACATTT...............
H.sapiens_7.1/103070347-103070414  TTAGGTTGGTGCAAAAGTGATTGT...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................C..............AG...........A......................................GGC.....A.........A...AA.A.........................C......AA.TACTTATC...CAC........
H.sapiens_3.1/3050435-3050514      .TAGCTTGATGCAAAAGTG.TTGC...A.G...T.TTT.T...............................A......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................G.C.....A.........ATTTAA.A.........................AC...GCAACTACTTTTG...CACCAACCTAA
H.sapiens_12.1/102388864-102388948 TTAGGTCGATGCAAAAGTAATTGT...G.A...T.TTT.T...............................GTGTGTGCCA..........TT...........................................TT................T..............AA..................................................GGC.....A.........A...AA.A.........................AC...ACAATTACTTTTGTACCACCAACCTAA
H.sapiens_9.1/129920586-129920516  TTAGATTGGTGCAAAAGTAATTGC.......................................................CA..........TT...A.....................................CTTT................T..............AA...........T......................................CGC.....A.........G...AA.A.........................CT...GCAATTACTTTTG...CACCAACCTAA
H.sapiens_2.1/156961367-156961290  ..AGGTAGGTGCAAAAGTAATTGC...A.G...T.TTT.T...............................A......CCA..........TT...A.....................................CTGT................C..............AA...........T......................................GGC.....A.........A...AA.A.........................CT...GCAATTATTTTTG...CACCAACCTAA
H.sapiens_11.1/100232855-100232928 TTAGGTTGATGCAAAAGTAATTGC...A.G...T.TTT.T...............................G......CCA..........TT...A..................................ATACTTT................T..............CA.....................................................................................................CC...GCAATTACTTTTG...CACCAACCTAA
H.sapiens_3.1/11149279-11149387    TTAGGTTCGTGCAAATGTAATTGC...G.G...T.TTT.GCGGCAGTTAACCATTAACCATTAACCCATTAA......CCA..........TT...A......................................TTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CACCAATCTA.
H.sapiens_9.1/109847472-109847361  ....GTTGGTGCAAAAGTAATTGC...A.A...T.TTT.T...............................G......CCA..........TT...AAAAGTGGCAAAATTACTTTTTGCCAGTGCAGTAATTACTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................TC...ACTATTACTTTTG...TACCAACCCA.
H.sapiens_17.1/21481167-21481089   TTGGGTTGGTGGAAAATTA.TTGC...T.G...T.TTT.T...............................G......ACA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...GCAATAACTTTTA...CACCAACCTAA
H.sapiens_5.1/155889779-155889858  TTAGGTTGGTACAAAAGTAATTGC...A.G...T.TTT.G...............................G......CCA..........TT...A.....................................CTTT................C..............AA...........T......................................GGC.....T.........A...AA.A.........................CT...GCAATTATTTTTG...CACCACCCTAA
H.sapiens_5.1/156505351-156505430  TTAGGTTGGTGCAAAAGTTATTAC...G.G...T.TTT.C...............................G......CCA..........TT...A.....................................CTTT................C..............GA...........T......................................GGC.....A.........A...AA.A.........................CT...GCAGTAATTTTTG...CACCAACCTAA
H.sapiens_2.1/125458425-125458504  TTAGGTTGGTGCAAATGCAATTGC...G.T...T.TTT.T...............................G......CCA..........CT...A.....................................TTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...ACAAATACATTTG...CACCAACCTAA
H.sapiens_1.1/163703592-163703667  TTAGTTTGGTGCAAAAGTAATTGC...T.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T...................................................................GC.....A.........C...CA.A.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_7.1/112155268-112155343  TTAGGTTGGTGCAAAA....TTGC...A.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................C..............AA...........T......................................GGC.....A.........A...AA.A.........................TC...GCAATTACTTTTG...CATCAACCTAA
H.sapiens_16.1/5132949-5132882     TTGGGTTGGTGCAAAAGTAGTTGC.......................................................CA..........TT...........................................TT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...ATGATTACTTTTG...TACCAACCTAA
H.sapiens_7.1/89235178-89235097    TTAGGAAGGTGCAAAA.TAATTGT...G.GGTTT.TTT.T...............................G......CCA..........TT...G.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................TG...ACAATTATTTTTG...CACCAACCTAA
H.sapiens_8.1/29786202-29786123    TTAGGTTGGTGCAAAAGTAATTGT...G.A...T.TTT.T...............................G......CCA..........TA...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.T.........................CC...GCAATTTGTTTTG...CACCAACCTAA
H.sapiens_1.1/101138934-101139013  TTAGGTTGGTACAAAAGTAATTGC...A.G...T.TTT.T...............................G......CTA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.C.........................CC...ATAATTACTTTTG...CAGCAACCTAA
H.sapiens_6.1/164960154-164960232  TTAGGTGGGTGCAAAAGTATTTGT...G.G...T.TTT.T...............................A......C.A..........TT...A.....................................CTTT................T..............AG...........T......................................GGC.....A.........A...AT.A.........................CC...ACAATTACTTTTG...CTCCAACCTAA
H.sapiens_12.1/42473656-42473579   .TAGGTTGGTGCAAAAGTTATT...........TATTT.T...............................G......CCA..........TTTTAA.....................................CGTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...GCAGTTACTTTTG...CACCAACCTA.
H.sapiens_16.1/26036634-26036555   TTAGATTGGTGCAAAAGTAATTGT...G.G...G.TTT.T...............................G......CCA..........TT...A.....................................TGTT................G..............AA...........A......................................GGC.....A.........A...AA.A.........................CC...GCAGTTACTTTTG...CACCAACCTAA
H.sapiens_9.1/72975697-72975634    .......GGTGTGAAAGTGATTAC...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................CT.............................................................................................A.........A...AA.A.........................CC...GCAATTGCTTTTG...CACCAACATAA
H.sapiens_1.1/179679390-179679469  TTATGTTGGTGCAAAAGTAATTGC...G.G...T.TTT.T...............................G......CTA..........TT...A.....................................CTTT................C..............AA...........T......................................GAC.....A.........A...AA.A.........................CC...TCAATTACTTTTG...CACCAGCCTAA
H.sapiens_5.1/18059725-18059789    ............AAGAGTACTTGCAGAG.G...T.....................................A......CCA..........TT...A.....................................CTTT................C..............AA...........T......................................GGC.....A.........A...AA.A.........................CT...ACAATTAGTTTTG...CACCAACCT..
H.sapiens_1.1/96352109-96352182    TTAGGTTGGTGCAAAAGTAATTGC...G.G...G.TTT.T...............................C......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................TT...GCAATTACGTTTG...TACCA......
H.sapiens_17.1/63353454-63353530   TTAGGTTGGTGCTAAAGTAATTGC...G.G...C.TTT.................................G......CAA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA...........................CC...GCAATTGCTTTT....CACCAATCTAA
H.sapiens_4.1/127479204-127479287  TTAGGTTAGTGCAAAAGTAATTTC...G.G...T.TTT.T..............................TG......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GAA.....A.........A...AA.A......................AAAAC...ACAATTACTTTTG...TATCAACCTAA
H.sapiens_16.1/5419829-5419906     TTAGGTTGGTGCAAAAGTAATTGC...A.G...T.TTT.................................G......TCA..........TT...A.....................................CTTT................T..............AG...........T......................................GAC.....A.........G...AA.A.........................CC...ACAATTACTTTTG...CACCAACCTA.
H.sapiens_2.1/223657898-223657820  TTAGGTTGGTGCAAAAGTAATTGT...G.G...T.TTT.T...............................G......CAA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...GCAATTACTTTTG...CAC.AACCCAA
H.sapiens_7.1/113651909-113651840  TTAGGTTGGTGCTGAAGTATTT...........T.TTT.T...............................T......C........................................................TTT................C..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_11.1/13999584-13999500   TTAGGTTGGTGCAAAAGTAATTGC...A.G...T.TTT.G...............................G......CCA..........TT...A................................ATGGTTTTG................C..............CA...........T......................................GGC.....A.........A...AA.A.........................CC...ACAATTACTTTCA...CACCAACCTAA
H.sapiens_13.1/80069602-80069692   TTAGGTTGGTGCAAAAATAATTGC...A.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................A..............AAATACTTTCAGAT......................................GGC.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CAACAACCTAA
H.sapiens_6.1/106323847-106323770  TTAGGTTGGTGCAAAAGTAATTGC.ACA.G...C.CTT.T...............................G......CCA..........TT...A.....................................CTTT................G..............AA...........T......................................GGC.....A.........A...AA...........................CT...GCAATTAATTTTG...CACCAACC...
H.sapiens_3.1/23648822-23648885    ...........CAAAAGT..TTAC.........T.TTT.T...............................G......CCA..........TT...C.....................................CTTT................C..............AG...........T......................................GGC.....A.........A...AA.A.........................CC...GCAATTACTTTTG...CACCAACTTA.
H.sapiens_16.1/52845319-52845407   TTAGGTGGGTGCAGAAGTAATTGT...G.G...T.TTT.T...............................A......CCT..........TT...A.....................................CTTT................T..............AA...........T......................................GCC.....ATTACTTTTAA...AA.A.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_1.1/194058636-194058563  TTAGGTTGGTGCAAAAGTAATTGT...G.G...T.TTT.T...............................G......CCT..........TT..........................................TTT................T..............AA...........T......................................C.....................AA.A.........................TG...GCAAAAACTTTTG...CACTAACCTAA
H.sapiens_3.1/73534351-73534287    TTAGGTTGGTGAAAAAGTAATTGC..............................................................................................................CACT................C..............AG...........T......................................GGC...............A...AA.A.........................CC...GCAATTATTTTTG...CACCGACCTAA
H.sapiens_18.1/61905795-61905691   TTAGGTTGGTACAAAAATGATTGC...A.G...T.TTT.T...............................G......CCA..........TT...A............AAAGTAATGGCAAAAAAAAAAAAAACTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CT...GTGATTACTTTTG...TACAAACCTAA
H.sapiens_X.1/131941078-131941148  TTAGGTTGGTGCAAAAGTATTTGC...G.G...T.T............................................................A.....................................CTTT................T..............AA...........T......................................GGC.....C.........G...AA.A.........................TG...GCAATTACTTTCG...GACCAACCTAA
H.sapiens_10.1/10905540-10905620   TTAGGTTGATGCAAAAGTAATTGC...A.G...T.TTT.T..............................TG......CCG..........TC...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_1.1/81508747-81508668    TTGGGTTGGTGCAAAAATAATTGC...G.G...T.TTT.G...............................G......CAA..........TT...A.....................................CTTT................T..............AA..........AT......................................GGC.....A.........A...AA...........................CT...GCAGTTACTTTTA...CACCAACCTAA
H.sapiens_5.1/18862138-18862066    ....GTTGGTGCTAAAGTAATTGC...A.A...T.TTT.T...............................G......TCA..........CT...A.....................................CTTT................T..............AA...........T......................................GGC.....A........GA...AA.A.........................CC...GCAATTACTTTTC...CATCTAC....
H.sapiens_1.1/56843087-56843008    TTAGGTTGGTGCAAAAGTAATTGC...A.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................C..............AA...........T......................................GGA.....A.........A...AATA.........................CT...GCAATTACTTTTG...CACCGACCTA.
H.sapiens_21.1/14719716-14719638   TTAGGTTGGTGCAAAAGTAATTGT...G.G...C.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............A............T......................................GAC.....A.........A...AA.A.........................CT...GTAATTACCTTTG...CACCAAACTAA
H.sapiens_1.1/174181505-174181439  TTAGGTTGGTGCAAAAGTAATTGC...C..........................................................................................................TTTT................T..............AA...........C......................................GGC.....A.........A...AG.A.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_2.1/96656055-96656137    TTAGATTGGTGCAAAGGCAATTGC...A.G...T.TTT.C...............................G......CCA..........TT...A.....................................CTTG................T..............AA...........T...................................TGCGGC.....A.........A...AA.A.........................CC...GCAATTGCTTTTG...CACCAACCTAA
H.sapiens_X.1/16091228-16091289    .................TAATTGA...G.G...T.TTT.T...............................G......TGA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...GCAATTACTTTTG...CACCAACCTA.
H.sapiens_8.1/8603107-8603048      TTAGGTTGGTGCAATAGTAATTGC...A.G...T.TTT.C...............................A......CAA..........TT............................................T................T..............AA...........T......................................GAC.....A.........A...AA.A.........................CC...GCAATTAC...................
H.sapiens_1.1/210838610-210838533  TTAGGTTGGAACAAAAGTAATTGT...A.G...T.TTT.................................G......TCA..........TT...A.....................................CTTT................C..............AA...........T......................................GGC.....A.........A...AA...........................CC...TCAATTACTTTTG...CACCAACCTAA
H.sapiens_12.1/114558175-114558094 TTAGGTTGGTACAAAAGTAATTGC...GAG...T.TTTGT...............................G......TCA..........TT...A.....................................CTTT................C..............AA...........T......................................GGC.....A.........A...AA.C.........................CC...ACAATTGCTTTTG...TACCAACTTAA
H.sapiens_6.1/54464787-54464719    TTAGGTTTGTGCAAAAGTAATAGT...G.G...T.T............................................................A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.A........................ATT...GTGATTACTTTTG...CACCAACC...
H.sapiens_5.1/6154559-6154483      ...GATTGGTGCAAAAGTAATTGC...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................A..............AA...........C......................................AGC.....A.........A...AA.A.........................CC...GCAATTACGTTTG...CATCAACCTAA
H.sapiens_4.1/4086165-4086087      .TAGGCTGGTACAAAAATAATTGC...T.G...T.TTT.T...............................G......CCG..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.T.........................CC...GCAATTACTTTTG...CACCAACCTAA
H.sapiens_2.1/59626468-59626391    TTAGGTTGGTGCAAAAGTAATTAC...G.G...T.TTT.................................G......TCA..........TT...A.....................................CTTT................C..............AG...........T......................................GGC.....A.........A...AA.A.........................CT...GCAATTACTTTTA...CATCAACCTA.
H.sapiens_9.1/3752099-3752177      TTAGGTTGGCACAAAAGTAATTGT...G.G...T.TTT.T...............................G......TC...........TT...C.....................................CTTT................C..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CACTGACCTAA
H.sapiens_12.1/16556446-16556522   TTAGATTGGTGCAAAAGTAATTGC...T.G...T.TTT.C...............................A......CCA..........TT..........................................TTT................T..............AA...........T......................................GTC.....A.........A...AA...........................CT...GCAATTACTTTTG...CACCAGCCTAA
H.sapiens_14.1/87329648-87329724   TTAGGTTGGTGCAAAAGTAATTGC...A.A...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............AA..........AT......................................GGC.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CACCAAC....
H.sapiens_13.1/77375943-77376017   ...GGTTGGTGCAAAAGTAACTGG...A.G...T.TT..................................G......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GGA.....A.........A...AA.A.........................TC...ACAATTACTCTTG...CACCAATCTAA
H.sapiens_1.1/175956513-175956575  ..AGGTTGGTACAAAAGTAATTGT...G.G...G.TTT.T...............................G......TCA..........TT...A.....................................CTTT................T..............AA...........T...................................................................................................TACTTTTG...CACCAGCCTAA
H.sapiens_8.1/34174926-34175003    ..AGGTTGGTGCAAAAGTAATTGC...G.T...T.TTT.T..............................TG......CTG..........TT...A.....................................CTTT................T..............AA...........T......................................G.C.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CACCAACCTAA
H.sapiens_6.1/100677426-100677507  TTAGGTTGGTGCAAAAGTAATTGC...T.G...T.TTT.T...............................G......C.A..........TT...A.....................................CTTT................T.........TAAAAAA...........T......................................GGC.....A.........A...AA.A.........................CT...GCAATTACTTTTG...CACTAACCT..
H.sapiens_2.1/207271364-207271278  TTAGATTGGTGCAAAAGTAGTTGC...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................GTTT................G..............AA...........T......................................GGGGAGAAA.........A...AA.A.........................CCCACACAATTACTTTTG...CAGCAACCTA.
H.sapiens_8.1/19172608-19172552    ............AAAAGTAACTGC...G.G...T.TTT.T...............................T...................TT...A.....................................C.......................................................................................GT.....A.........A...AA.A.........................CC...GCAATTACTTTTG...CACCGACCTAA
H.sapiens_12.1/104953725-104953645 TTAGGTTGGTGCAAAAGTAATTAC...T.G...T.TTT.C...............................T......CCA..........CT...A.....................................CTTT................T..............AA.........AAT......................................GGC.....A.........A...AA.A.........................CC...ACAATTACTTTTG...CACCAACCTA.
H.sapiens_17.1/66383129-66383208   TTAGGTTGGTGCAAAAGTTGTTGC...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............AG...........T......................................AGC.....A.........A...AA.A.........................CT...GCAATGACTTTCG...CACCAACCTAA
H.sapiens_3.1/15175933-15176011    .TAGGCTGGTACAAAAATAATTGC...T.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.T.........................CC...ACAGTTACTTTTG...CACCAACCTAA
H.sapiens_1.1/99256240-99256297    TTAAGTTGGTGCAAAAGTAATTG......G...T.TTT..........................................................A.....................................CTTT................T......................................................................................................................T...GCAAT.ACTTTTG...CACCAACCTAA
H.sapiens_6.1/79729950-79729848    TTAGGTTGGTGCAAAAATAATTGC...A.G...T.TTT.T...............................G......CCA..........TT...A......................................TTT................T..............AA...........T......................................GGT.....A.........A...AA.AGCTTTTTTTTAAAAAAAAGGCAAAACC...GCAATTATTTTTG...CACCAACCTA.
H.sapiens_16.1/24024682-24024566   TTAGGTTGGTGCAGAAGTAACTGT...G.....C.TTT.T...............................G......CCA..........TT...A.....................................TTTT................T..............AA...........TTACTTTTAACTAATTACTATTGCACCATTATTTACAATAGC.....A.........A...AA.A.........................CC...GCAATTACTTTTG...CACCAACCTAA
H.sapiens_1.1/245120589-245120667  TTAGGTTGGTGCAAAATTAATTGC...G.G...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA...........................CA...GCAATTACTTTTG...CACCAACCGAA
H.sapiens_8.1/84350905-84350967    .TAGGTTGATGCAAAAGTAAGCGT...G.A...T.TTT.T...............................G......CCA..........TT...A.....................................CT.............................................................................................................................................ACAATTACTTTTG...CACCAACCTAA
H.sapiens_4.1/9707323-9707390      TTAGGTTGGTGCAAAAGTAATTG....................................................................TC...A.....................................TTTT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CC...GTGATTACTTTTG...CACCAACCTAA
H.sapiens_X.1/70266711-70266778    TTAGGTTGGTGCAAAATAAATT.................T...............................G......CCA..........TT...........................................TT................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CT...GCAATAACTTT.G...CACGAACCTAA
H.sapiens_9.1/37068668-37068747    TTAGGTTGGTGCAAAAGTAACTGC...G.G...T.TTT.T...............................G......TCAAAACTTTTAATT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A.........................................CTAC.TTTG...CGCCAACTTAA
H.sapiens_5.1/34677939-34678010    ....GTTGGTGAAAAAGTAATCGT...G.G...T.TTT.T...............................G......TTA..........TT............................................T................T..............AA...........T......................................GGC.....A.........A...AA.A.........................CT...GCAATTACTTTTG...CACCAATCTAA
H.sapiens_7.1/32510325-32510246    TCAGGTTGATGCAAAAGTAATGGC...A.A...T.TTT.T...............................G......CCA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....A.........A...AG.A.........................CT...GCAGTTACTTTTG...CACCAACTTAA
H.sapiens_7.1/146677016-146677090  TTAGGTTGGTGCAAAA.TAAGTGT...G.G...C.TTT.................................G......ACA..........TT...A.....................................CTTT................T..............AA...........T......................................GGC.....T.........A...AA...........................CT...GCAATTACTTTTG...CACCAACCT..
H.sapiens_7.1/39334003-39333910    TTAGGTTGGCGCAAAAGTAATTGT...G.G...T.TTT.T...............................G......CCA..........TC...G.....................................CTTT................TTGCCATCACTTTTTGA...........T......................................GGC.....A.........A...AA.A.........................CC...GCAATTACTTTTG...CGCCAACCTAA
H.sapiens_X.1/93468166-93468090    TTAGGTTGGTGCAAAAGTAATTGT...G.G...T.TTT.T...............................G......CCA.....................................................CTTT................T..............AA...........T......................................GGC.....A.........A...AA.T.........................CC...GCAATTACTTTTG...CACCAACCCAA
H.sapiens_2.1/5196153-5196253      .....TTGGTGCAAAAGTAATTTC...A.G...T.TTT.T...............................G......CCA..........TT...A...........AAAGTGAGGGCCATAAACCTCAATTGCTTC................T..............AA...........T......................................GGC.....A.........A...AA.C.........................CT...GCAATAACTTTTG...CACCCACCTAA
H.sapiens_10.1/14482909-14482844   TTAGGTTGGTGCAAAGGT.....................................................G......CCA..........TT...A.....................................CTTT................T..............CA...........T......................................GGC.....A.........A...AA.G.........................TC...GCAATTACCTTTG...CATCAACCTA.
H.sapiens_20.1/38404718-38404797   TTAGGTTGGTGCAAAAGTCATTGT...G.G...T.TTT.T...............................G......CCT..........TT...A.....................................ATTT................C..............AA...........T......................................GTC.....A.........A...AA.A.........................CC...ACAATGACTTTTG...CAGCAATCTAA
#=GC RF                            xxxxxxxxxxxxxxxxxxxxxxxx...x.x...x.xxx.x...............................x......xxx..........xx...x.....................................xxxx................x..............xx...........x......................................xxx.....x.........x...xx.x.........................xx...xxxxxxxxxxxxx...xxxxxxxxxxx
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