Modeller Guide

Modelling Systems with MacSyFinder

• Models Package
  • Structure of a macsy-model package
• Macromolecular models
  • Principles, and how to write macsy-models definitions
• Helper Tool
  • macsyprofile
• Publishing/sharing models
  • Writing your own macsy-model package
  • Sharing your models
• Gallery of examples of MacSyFinder’s models
  • Getting started with a one-component system: the autotransporter T5SS
  • A (not-so-)simple example: modelling the T1SS
  • The case of T3SS and bacterial flagella, or how to distinguish homologous cellular machineries

Carrying models from v1 to v2

• Carrying models from v1 to v2
  • 1. A very simple model.
  • 2. A model with homologs.
  • 3. A model with exchangeable homologs.

Frequently Asked Questions

• Frequently Asked Questions
  • How to report an issue?
  • How to list several components or HMM profiles for a given function in the model?