.. MacSyFinder - Detection of macromolecular systems in protein datasets
    using systems modelling and similarity search.
    Authors: Sophie Abby, Bertrand Néron
    Copyright © 2014-2023  Institut Pasteur (Paris), and CNRS.
    See the COPYRIGHT file for details
    MacsyFinder is distributed under the terms of the GNU General Public License (GPLv3).
    See the COPYING file for details.

.. _scripts:

*******
scripts
*******

The are 4 entry points.

    * macsyfinder: which is the main scripts
    * macsydata: which allow to manage the models
    * macsyconfig: an interactive conversational utility to generate macsyfinder configuration file
    * macsyprofile: an utility dedicated to modelers which gather information about hmmer output

.. _scripts_api:

API reference
=============

macsyfinder
===========
.. automodule:: macsypy.scripts.macsyfinder
   :members:
   :private-members:
   :special-members:

macsydata
=========
.. automodule:: macsypy.scripts.macsydata
   :members:
   :private-members:
   :special-members:

macsyconfig
===========
.. automodule:: macsypy.scripts.macsyconfig
   :members:
   :private-members:
   :special-members:

macsyprofile
============
.. automodule:: macsypy.scripts.macsyprofile
   :members:
   :private-members:
   :special-members: