The name (or number) identifying the motif in the input files.

The visual representation of the position weight matrix otherwise known as the motif logo.

The number of term predictions.

If specificity data is avaliable then this displays the top 5 specific predictions, otherwise it just displays the top 5 predictions.

The Gene Ontology Consortium term for a specific role or locality. Used for annotating genes with their purposes.

A score generated as the geometric mean of rank-sum test(s) for the particular Gene Ontology term. The two groups compared by the rank-sum test are scores of genes annotated with the GO term and scores of genes not annotated with the GO term.

An empirically generated p-value. The null hypothesis is that by shuffling the labels on gene scores, any possible association between the set of genes that a GO term annotates is destroyed. A large number of scores are generated using the null hypothesis and the number of null hypotheis scores that are better than each of the real scores is summed and then divided by the total null hypothesis scores generated to calculate a p-value.

An empirically generated q-value. The q-values are calculated from the p-values using the method proposed by Benjamini & Hochberg (1995).

A measure of the relative position in the GO hierarchy showing how specific a term is. A value of 100% implies that the GO term is the most specific form whereas a value of 0% implies that the GO term is one of the three roots of the Gene Ontology with only terms below it. A tilda (~) infront of the percentage implies that the value shown has been rounded and is not exact.

The Gene Ontology hierarchy and Gene Ontology name of the term. The hierarchy is specified by the abbreviations BP for biological process, CC for cellular component and MF for molecular function.

Gene name and rank of (up to) top 10 genes annotated with the GO term for the primary species.